Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B12
(176 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11148-1|AAA28104.1| 237|Caenorhabditis elegans lin-31 protein ... 47 2e-06
AF016669-4|AAB66096.1| 237|Caenorhabditis elegans Abnormal cell... 47 2e-06
Z49125-2|CAA88935.1| 333|Caenorhabditis elegans Hypothetical pr... 34 0.012
Z92833-5|CAK12560.1| 411|Caenorhabditis elegans Hypothetical pr... 33 0.020
Z92833-4|CAK12559.1| 442|Caenorhabditis elegans Hypothetical pr... 33 0.020
Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical pr... 33 0.020
U80444-10|AAB37792.2| 362|Caenorhabditis elegans Lethal protein... 33 0.020
U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork head/HNF-3... 33 0.020
U39848-8|AAA80692.1| 323|Caenorhabditis elegans Forkhead transc... 33 0.020
U41268-3|AAA82436.1| 270|Caenorhabditis elegans Forkhead transc... 31 0.082
Z81038-11|CAB02761.1| 230|Caenorhabditis elegans Hypothetical p... 29 0.44
Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein ... 27 1.8
Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein ... 27 1.8
Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein. 27 1.8
U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned expre... 27 1.8
Z92827-7|CAB07324.1| 368|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 2.3
U40933-1|AAA81672.1| 699|Caenorhabditis elegans Bbs (bardet-bie... 26 3.1
AF098987-7|AAC67430.1| 310|Caenorhabditis elegans Forkhead tran... 26 3.1
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 25 9.4
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 25 9.4
>L11148-1|AAA28104.1| 237|Caenorhabditis elegans lin-31 protein
protein.
Length = 237
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 76 MPRPTRESYGDQKPPFSYIALTAMAIWSSPERM 174
MPRP ++SY +QKPP+SYI LT MAI S ++M
Sbjct: 1 MPRPGKDSYDEQKPPYSYIWLTYMAIQDSDDKM 33
>AF016669-4|AAB66096.1| 237|Caenorhabditis elegans Abnormal cell
lineage protein 31 protein.
Length = 237
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 76 MPRPTRESYGDQKPPFSYIALTAMAIWSSPERM 174
MPRP ++SY +QKPP+SYI LT MAI S ++M
Sbjct: 1 MPRPGKDSYDEQKPPYSYIWLTYMAIQDSDDKM 33
>Z49125-2|CAA88935.1| 333|Caenorhabditis elegans Hypothetical
protein C47G2.2 protein.
Length = 333
Score = 34.3 bits (75), Expect = 0.012
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 112 KPPFSYIALTAMAIWSSPER 171
KPP+SYIAL AM+I +SPE+
Sbjct: 127 KPPYSYIALIAMSILNSPEK 146
>Z92833-5|CAK12560.1| 411|Caenorhabditis elegans Hypothetical
protein F38A6.1c protein.
Length = 411
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 97 SYGDQKPPFSYIALTAMAIWSSPER 171
+YG KPP+SYI+L MAI S R
Sbjct: 136 TYGQSKPPYSYISLITMAIQKSNSR 160
>Z92833-4|CAK12559.1| 442|Caenorhabditis elegans Hypothetical
protein F38A6.1b protein.
Length = 442
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 97 SYGDQKPPFSYIALTAMAIWSSPER 171
+YG KPP+SYI+L MAI S R
Sbjct: 167 TYGQSKPPYSYISLITMAIQKSNSR 191
>Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical
protein F38A6.1a protein.
Length = 506
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 97 SYGDQKPPFSYIALTAMAIWSSPER 171
+YG KPP+SYI+L MAI S R
Sbjct: 231 TYGQSKPPYSYISLITMAIQKSNSR 255
>U80444-10|AAB37792.2| 362|Caenorhabditis elegans Lethal protein
381 protein.
Length = 362
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 109 QKPPFSYIALTAMAIWSSPER 171
+KPPFSYIAL AMAI P++
Sbjct: 71 EKPPFSYIALIAMAISKRPDK 91
>U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork
head/HNF-3-like protein protein.
Length = 506
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 97 SYGDQKPPFSYIALTAMAIWSSPER 171
+YG KPP+SYI+L MAI S R
Sbjct: 231 TYGQSKPPYSYISLITMAIQKSNSR 255
>U39848-8|AAA80692.1| 323|Caenorhabditis elegans Forkhead
transcription factor familyprotein 6 protein.
Length = 323
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 91 RESYGDQKPPFSYIALTAMAIWSSPER 171
+E KPP+SY+AL AMAI +SP++
Sbjct: 14 QEGNSIDKPPYSYVALIAMAIDASPDK 40
>U41268-3|AAA82436.1| 270|Caenorhabditis elegans Forkhead
transcription factor familyprotein 2, isoform a protein.
Length = 270
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 106 DQKPPFSYIALTAMAIWSSPER 171
+ KPPFSY AL MAI SPE+
Sbjct: 91 NDKPPFSYNALIMMAIKDSPEK 112
>Z81038-11|CAB02761.1| 230|Caenorhabditis elegans Hypothetical
protein C25A1.2 protein.
Length = 230
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 112 KPPFSYIALTAMAIWSSPER 171
KP SYI L AMAI SSP++
Sbjct: 78 KPQHSYIGLIAMAILSSPQK 97
>Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein
protein.
Length = 264
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 109 QKPPFSYIALTAMAIWSSP 165
++P +SY AL AMAI SSP
Sbjct: 92 KRPKYSYNALIAMAIQSSP 110
>Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein
protein.
Length = 228
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 109 QKPPFSYIALTAMAIWSSP 165
++P +SY AL AMAI SSP
Sbjct: 56 KRPKYSYNALIAMAIQSSP 74
>Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein.
Length = 264
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 109 QKPPFSYIALTAMAIWSSP 165
++P +SY AL AMAI SSP
Sbjct: 92 KRPKYSYNALIAMAIQSSP 110
>U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned
expression site protein 1 protein.
Length = 264
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 109 QKPPFSYIALTAMAIWSSP 165
++P +SY AL AMAI SSP
Sbjct: 92 KRPKYSYNALIAMAIQSSP 110
>Z92827-7|CAB07324.1| 368|Caenorhabditis elegans Hypothetical
protein C29F7.4 protein.
Length = 368
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 82 RPTRESYGDQKPPFSYIALTAMAIWSSPE 168
+P+ + ++PP SY+AL A+A ++P+
Sbjct: 55 QPSADISDLRRPPISYVALCALACRNAPD 83
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 82 RPTRESYGDQKPPFSYIALTAMAIWSSPE 168
+P+ + ++PP SY+AL A+A ++P+
Sbjct: 409 QPSADISDLRRPPISYVALCALACRNAPD 437
>U40933-1|AAA81672.1| 699|Caenorhabditis elegans Bbs (bardet-biedl
syndrome) proteinprotein 2 protein.
Length = 699
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 74 LCLDLHGNLTVIRN 115
+C D+H NLTV RN
Sbjct: 106 ICYDVHNNLTVFRN 119
>AF098987-7|AAC67430.1| 310|Caenorhabditis elegans Forkhead
transcription factor familyprotein 8 protein.
Length = 310
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 103 GDQKPPFSYIALTAMAIWSSPER 171
G KPP+SY L +AI +P++
Sbjct: 53 GADKPPYSYSQLIRLAIEDTPDK 75
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 97 SYGDQKPPFSYIALTAMAIWSSPER 171
+YGD++P F+Y+ + + +P R
Sbjct: 470 TYGDKQPQFAYLPVDVPTVKPTPVR 494
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 97 SYGDQKPPFSYIALTAMAIWSSPER 171
+YGD++P F+Y+ + + +P R
Sbjct: 503 TYGDKQPQFAYLPVDVPTVKPTPVR 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,705,797
Number of Sequences: 27780
Number of extensions: 50701
Number of successful extensions: 79
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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