Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B12
         (176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.036
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   0.59 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   4.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   7.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   7.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    18   9.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    18   9.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    18   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    18   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.036
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 91  RESY--GDQKPPFSYIALTAMAIWSSPER 171
           RE Y   D +PPF+Y +L   +I  SP++
Sbjct: 495 REFYKNADVRPPFTYASLIRQSIIESPDK 523


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 156 PDGHSGQGYV*EGWFLITVRFPCRSRHNIP 67
           P  H G   + +GW L    FP +  H +P
Sbjct: 114 PCEHRGLVSIIDGWELNGEVFPSKMDHQLP 143


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 83  DLH-GNLTVIRNHPSHT*P*PLWPS 154
           +LH G  T+IRN        P WPS
Sbjct: 568 NLHAGENTIIRNSQQAPGQSPDWPS 592


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 120 GWFLITVRFPC 88
           G+FLI V  PC
Sbjct: 245 GYFLIQVYVPC 255


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 77  IISRGCVC**CYLRRE 30
           I + GCVC   YLR +
Sbjct: 66  ICAPGCVCRLGYLRNK 81


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 77  IISRGCVC**CYLRRE 30
           I + GCVC   YLR +
Sbjct: 66  ICAPGCVCRLGYLRNK 81


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 77  CLDLHGNLTVI 109
           CL L GN+ VI
Sbjct: 198 CLTLFGNVLVI 208


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 93  PCRSRHNIPRMCMLIMLPPS*IV 25
           PC S      +CML++L  + I+
Sbjct: 83  PCSSFRFYWDLCMLLLLVANLII 105


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 93  PCRSRHNIPRMCMLIMLPPS*IV 25
           PC S      +CML++L  + I+
Sbjct: 83  PCSSFRFYWDLCMLLLLVANLII 105


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 93  PCRSRHNIPRMCMLIMLPPS*IV 25
           PC S      +CML++L  + I+
Sbjct: 83  PCSSFRFYWDLCMLLLLVANLII 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,608
Number of Sequences: 438
Number of extensions: 733
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)