Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B11
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   0.60 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   0.79 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   3.2  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    23   4.2  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    23   5.6  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    22   9.8  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    22   9.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    22   9.8  

>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 164 SNPPPECPMH 193
           +NPPP CPMH
Sbjct: 82  ANPPPGCPMH 91


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 142 FIIGLCCYFIAHVCDLRKTKF 80
           +++ LCCY+I   C+ +K  F
Sbjct: 316 YVLLLCCYYIFDTCNGQKNHF 336


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 154  ASSCFIIGLCCYFIA 110
            AS CF I L C F+A
Sbjct: 2323 ASPCFYIALICQFVA 2337


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 142 FIIGLCCYF 116
           F +GLCCYF
Sbjct: 243 FALGLCCYF 251


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 143 TTTGLKNSNPPPEC 184
           T+ G  NSN PP+C
Sbjct: 78  TSVGHDNSNSPPKC 91


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 178 WWRIRILQASSCFIIGLCCYFIAHVCDLRKTKF*YRGYISPHIFTLVP 35
           WW ++ L   S  I+    YF   +  L+ T   +   IS  I TLVP
Sbjct: 337 WW-LKYLGPFSYLIL---YYFFLDISKLQMTSLTFFLLISTTILTLVP 380


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 192 CIGHSGGGFEFF 157
           C G SG GF+FF
Sbjct: 353 CTGGSGHGFKFF 364


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 181 FWWRIRILQASSCFIIGLCCYFIAHV 104
           FW+ I     S+CF + L  +F  H+
Sbjct: 440 FWYAISFGVFSNCFSLQLQSFFEKHL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,661
Number of Sequences: 5004
Number of extensions: 11324
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)