Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B11
         (193 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.      26   3.2  
AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical...    25   9.8  

>AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.
          Length = 542

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 131 AYDKTTTGLKNSNPPPECP 187
           AY+  T+ L    PPP CP
Sbjct: 479 AYESPTSALMPRRPPPSCP 497


>AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical
           protein Y71F9B.8 protein.
          Length = 542

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 131 AYDKTTTGLKNSNPPPECP 187
           AY+  T+ L    PPP CP
Sbjct: 479 AYESPTSALMPRRPPPSCP 497


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
            ZK287.4 protein.
          Length = 1208

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -1

Query: 49   FTLVP-NLCSHGDPLV 5
            FT VP N+C  GDPL+
Sbjct: 1063 FTFVPRNMCPQGDPLI 1078


>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 48  KICGDI*PLY*NLVLRKSQTWAIK*QQRPMIKQLLA*RIRIRHQNVL 188
           K+   I P+  N++   S+T ++    RP +  LL+  + I+H N+L
Sbjct: 207 KLDDSIYPILYNILNESSET-SLDFDSRPAVGSLLSRMLGIKHANLL 252


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 139 IIGLCCYFIAHVCDLRKTKF*YRGYISPHIFTLVPNLCSHGDPL 8
           IIG+  Y++AH  +   TK  Y G      + +  N+CS   PL
Sbjct: 109 IIGIVVYWVAHSTNSHLTKTTYVGN-----YCIFLNICSVAAPL 147


>AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.15 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 107 MGNKVTAEAYDKTTTGLKNSNPPP 178
           MGN  TA+ Y   T    +S PPP
Sbjct: 1   MGNPETAQVYPVATGPQMDSAPPP 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,445,122
Number of Sequences: 27780
Number of extensions: 64683
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)