Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B10
         (275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   157   1e-39
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.004
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    28   0.82 
U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   3.3  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    25   5.8  
Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    25   5.8  
Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    25   7.7  
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    25   7.7  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  157 bits (380), Expect = 1e-39
 Identities = 71/85 (83%), Positives = 78/85 (91%)
 Frame = +1

Query: 19  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 198
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 199 QPNSAIRKCVRVQLIKNGKKGTAFV 273
           QPNSAIRKCVRVQLIKNGKK TAFV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFV 85


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +1

Query: 145 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKGTAFV 273
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +  A++
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYI 113


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +1

Query: 16  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG--------GASHAKGIV 171
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 172 LEKVGVEAKQPNSAIRK 222
              V +E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 6   RRYRNG*TSGYSHGAQA-RESSSRAAMGRQGIQKSPHGYEMEGEPLR 143
           RR+  G    YS+     R+S S+    R GI    H Y  E  PLR
Sbjct: 5   RRFSPGANPDYSNRTMNYRDSRSQQITPRGGIDSRVHAYGREYPPLR 51


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 63  SSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 152
           S SR+   R+   +SP   E   +P RWC+
Sbjct: 579 SRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 71  ASSDGPTRNSKKPTWVRDGRR 133
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 71  ASSDGPTRNSKKPTWVRDGRR 133
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 40  RTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 201
           +   K  + R +Q   DKE ++A    R  A     A   + +  EKV ++ KQ
Sbjct: 362 KALEKEKHERLQQEAKDKEDERARDKARKDAKAREEAKSREDVKAEKVAIDPKQ 415


>Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical
           protein C47G2.5a protein.
          Length = 776

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 GHRPRKSWR*SQAAEFSH 215
           GHRP  +W    A +FSH
Sbjct: 676 GHRPENNWVDETAPDFSH 693


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 62  IIVASSDGPTRNSKKPTW 115
           II   +DGPT    KP W
Sbjct: 63  IIAPGADGPTETKAKPKW 80


>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +1

Query: 49  RKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 198
           RKH NH+  Q    KE K A    R+     G     K I  +K     K
Sbjct: 17  RKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKK 66


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +1

Query: 49  RKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 198
           RKH NH+  Q    KE K A    R+     G     K I  +K     K
Sbjct: 17  RKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKK 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,082,464
Number of Sequences: 27780
Number of extensions: 141936
Number of successful extensions: 322
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)