Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B08
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    47   1e-06
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    39   2e-04
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    36   0.002
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.008
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    29   0.24 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    27   0.73 
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    27   0.73 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    27   0.96 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   1.3  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   2.9  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   5.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    24   6.8  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.8  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    24   6.8  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    24   6.8  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        24   9.0  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +3

Query: 246 FAKDFLAGGISAGVSKTGVAPIERVKLLLQVQ 341
           F  DF+ GG+SA VSKT  APIERVKLL+Q Q
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQ 58


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 15/28 (53%), Positives = 25/28 (89%)
 Frame = +3

Query: 261 LAGGISAGVSKTGVAPIERVKLLLQVQH 344
           L+GG++A VS+T V+P+ER+K++ QVQ+
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQN 52


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 252 KDFLAGGISAGVSKTGVAPIERVKLLLQVQHVS 350
           K  +AGG +  V+K+ VAP++RVK+L Q  H S
Sbjct: 19  KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHAS 51


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +3

Query: 234 DPVAFAKDFLAGGISAGVSKTGVAPIERVKLLLQVQHVSKESRRGP 371
           DP      F++GGI+  VS+T  AP++R+K++L     SK S + P
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVMLISDTGSKPSPKYP 168



 Score = 26.2 bits (55), Expect = 1.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 258 FLAGGISAGVSKTGVAPIERVKLLLQVQHVSK 353
           +LAGG++  V++  + P++ +K  +Q   +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 237 PVAFAKDFLAGGISAGVSKTGVAPIERVKLLLQVQHVSKESRRGP 371
           PV   + +++G IS   +   V P+E V++ LQ+Q        GP
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQTGKNVLYHGP 153


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 168 PSLSASIHPKMTT*SNKMSNLADPVAFAKDFLAGGISAGVSKTGVAPIERVKLLLQ 335
           PS ++     + T +N  SN   P   +  F+AGG++  +     AP++ VK  LQ
Sbjct: 23  PSENSQKTKVLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 126 GSFFVVFPFRVCRSPSLSASIHPKMTT*SNKMSNLADPVAF--AKDFLAGGISAGVSKTG 299
           G+F++ +P  +  S   +A    ++ T    MS L     +      ++GG+S  ++ + 
Sbjct: 165 GAFYISYPTCIAMSIPFTAI---QVATYDTCMSFLNPNAVYDPTSHIISGGLSGAIASSL 221

Query: 300 VAPIERVKLLLQVQ 341
             P++ VK LLQ +
Sbjct: 222 TTPLDVVKTLLQTR 235


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 261 LAGGISAGVSKTGVAPIERVKLLLQVQHVS 350
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 68  LPLCSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKY 187
           +PLC  D+    +LL  + G   RG+ I  + K F +  +
Sbjct: 165 VPLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHF 204


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 252 KDFLAGGISAGVSKTGVAPIERVKLLLQVQ 341
           KD +AGG +   S   VAP++ VK   Q Q
Sbjct: 7   KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 2    HEAPPCRTARERDRSNFKKGTH 67
            H+ PP  +   + +S F KG H
Sbjct: 1265 HQVPPPESLIHKSKSKFSKGNH 1286


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 225 NLADPVAFAKDFLAGGISAGVSKTGVAPIERVKLLLQ 335
           +LAD   F +  LA  +++G++ +  AP+  V   L+
Sbjct: 200 SLADSEIFTRQLLAAAMASGIAASFNAPVGGVIFALE 236


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 246 TRLDRRDSTFCSIMWSSLGGYLRTRK 169
           TRL   DS  CS + S  GG  R  K
Sbjct: 106 TRLKENDSRLCSPLASPTGGLKRPAK 131


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 367 PRRLSLLTCWTWSS--NLTRSMGATPVLETPAEIPPARKSLANATGS 233
           PRR+S  + +   S    T +  A+PV + P   PP  + LA  T S
Sbjct: 193 PRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSS 239


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 80  SCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPPKDDHI 208
           +C H       + NR +   GFS      SF VR+   ++  I
Sbjct: 245 TCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNGEEQKI 287


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 255 LWRTRLDRRDSTFCSI 208
           LW+ R D RD   CSI
Sbjct: 492 LWKNRKDFRDKLICSI 507


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -1

Query: 373 VGPRRLSLLTCWTWSSNLTRSMGATPVLETPAEIPPARKSLANATGSARFDILFDYV 203
           V P  L  +    W+ N+T     T    T   +PP RK L    G   F   F +V
Sbjct: 280 VQPENLLTIARLAWN-NVTAKANDTRKSITKFSVPPERKLLWARNGFFIFASAFSFV 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,152
Number of Sequences: 5004
Number of extensions: 33640
Number of successful extensions: 121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)