Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B08
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    82   2e-18
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    82   2e-18
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   8.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 82.2 bits (194), Expect = 2e-18
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 219 MSNLADPVAFAKDFLAGGISAGVSKTGVAPIERVKLLLQVQHVSKE 356
           MS LADPVAFAKDFLAGG++A +SKT VAPIERVKLLLQVQH+SK+
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQ 46


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 82.2 bits (194), Expect = 2e-18
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = +3

Query: 219 MSNLADPVAFAKDFLAGGISAGVSKTGVAPIERVKLLLQVQHVSKE 356
           MS LADPVAFAKDFLAGG++A +SKT VAPIERVKLLLQVQH+SK+
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQ 46


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 347 DVLDLEQQFDALDGRYACLGDAGGDTASQKVFGERDWIG 231
           +V D    +   +G   CL   GG+ A  KV   + + G
Sbjct: 226 EVCDYPDIYSGYEGALRCLAHNGGEIAWTKVIYVKRFFG 264


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 347 DVLDLEQQFDALDGRYACLGDAGGDTASQKVFGERDWIG 231
           +V D    +   +G   CL   GG+ A  KV   + + G
Sbjct: 226 EVCDYPDIYSGYEGALRCLAHNGGEIAWTKVIYVKRFFG 264


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 347 DVLDLEQQFDALDGRYACLGDAGGDTASQKVFGERDWIG 231
           +V D    +   +G   CL   GG+ A  KV   + + G
Sbjct: 226 EVCDYPDIYSGYEGALRCLAHNGGEIAWTKVIYVKRFFG 264


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 86  DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 193
           D  ++P   I+NR  +  G S P   +     K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 159 THGMEKPRKTNPRFLIRRFGVIS 91
           THG   P       LIR  G +S
Sbjct: 55  THGKGTPTVVKTNILIRSMGPVS 77


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 154 RNGKTTKNEP 125
           RNGKTT+  P
Sbjct: 382 RNGKTTEENP 391


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 144 KPRKTNPRFLIRRFGVIS*SQEH 76
           +P    PR  IR   VI  +QEH
Sbjct: 518 EPSACRPRHEIRSTDVIPGTQEH 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,248
Number of Sequences: 438
Number of extensions: 2164
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)