Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B07
(184 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 34 0.002
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 33 0.007
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 25 1.00
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 1.3
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 24 2.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 2.3
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 24 2.3
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 23 4.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 23 4.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 23 4.0
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 23 4.0
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 23 5.3
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 23 5.3
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 23 5.3
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 23 5.3
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 23 7.0
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 22 9.3
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 22 9.3
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 34.3 bits (75), Expect = 0.002
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 27 LSQKELIGQVQSHYTGQALKQXXXXXXXXXXXXNPYGLVVGLKKGVEDLFYE 182
+S + L V++HY+ + L Q NP GL + G D+FYE
Sbjct: 2730 VSLRRLFELVKNHYSQELLSQVHKIVGSADFLGNPVGLFTTITSGFADIFYE 2781
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 32.7 bits (71), Expect = 0.007
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 39 ELIGQVQSHYTGQALKQXXXXXXXXXXXXNPYGLVVGLKKGVEDLFYE 182
E+ +V SHY Q Q NP GL + GV D+FYE
Sbjct: 2671 EMANRVASHYKQQVGYQIYKIAGRADFLGNPVGLFNNVASGVFDMFYE 2718
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 1.00
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1
Query: 73 GRHSNSCMYWCWVWTSW 123
G HS +W W W +W
Sbjct: 518 GPHSFHLYHWWWTWGAW 534
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 169 SSTPFFKPTTRPYGLPRTSKPSTNTY 92
SST F P T GL S PS++ Y
Sbjct: 120 SSTTFVPPATMGGGLNNLSSPSSSLY 145
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 98 YIQLFECLPGVVTLHLTY*LFLRQKF 21
+ Q + C P VV + + + L RQKF
Sbjct: 515 FFQSYLCFPVVVIVFIAHALITRQKF 540
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 113 QTQHQYIQLFECLPGVV 63
+++H Y++L E LPGV+
Sbjct: 1520 ESEHYYLELKESLPGVL 1536
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 124 PRTSKPSTNTYSCLS 80
PRTS PS+N +C+S
Sbjct: 17 PRTSSPSSNFKTCVS 31
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 113 QTQHQYIQLFECL-PGVVTLHLTY*LFLRQKFVISFPR 3
++Q + LF L PG+VT+ + Y L++R++ +S +
Sbjct: 183 RSQEFSLILFGLLFPGIVTMVVFYALYMRREVFLSLDK 220
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 32 SERVNRSSAKSLHRAGTQTAVCIGAGFGRP 121
S R SS++ R+G+ T G GFG P
Sbjct: 866 SSRGMYSSSRQSSRSGSNTHSHAGPGFGGP 895
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.4 bits (48), Expect = 4.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 167 LDALLQANNKTIRVTQDVQTQHQYIQLFECLPGVV 63
L LLQ V D + HQYI L GV+
Sbjct: 731 LGYLLQHPQVKKLVVDDTRYVHQYIDLLRVFQGVI 765
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 145 TTRPYGLPRTSKPSTNTY 92
TT P P T PS +TY
Sbjct: 460 TTNPSATPTTGDPSNSTY 477
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 23.0 bits (47), Expect = 5.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 143 NKTIRVTQDVQTQHQYIQLFECLPGVV 63
+K I DV++Q Q Q ECL V+
Sbjct: 153 SKAIENLGDVESQEQRNQTIECLVNVL 179
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 169 SSTPFFKPTTRPYGLPRTSKPSTNTYSC 86
S+TP +KP R KP Y C
Sbjct: 158 SATPIYKPNQRRIAASVPDKPPPPGYIC 185
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 169 SSTPFFKPTTRPYGLPRTSKPSTN 98
S + F P P P+ SKP++N
Sbjct: 31 SHSQLFTPCPVPPSFPKASKPNSN 54
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 23.0 bits (47), Expect = 5.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 126 NPYGLVVGLKKGV 164
NPY ++VGL G+
Sbjct: 149 NPYAIIVGLNPGI 161
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 76 RHSNSCMYWCWVWTSWVTR 132
+H C +W VW+S +TR
Sbjct: 207 KHCEDCFHWEAVWSS-ITR 224
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +1
Query: 106 WVWTSWVTRMVLLL 147
W WT W T +V ++
Sbjct: 204 WPWTYWTTAIVCIV 217
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 110 TQHQYIQLFECLPGVVTLHLTY 45
T Q+ + P + TLHLTY
Sbjct: 255 TADSLFQIAQYCPNLQTLHLTY 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,931
Number of Sequences: 5004
Number of extensions: 11808
Number of successful extensions: 45
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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