Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B06
(280 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 23 0.81
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 20 4.3
DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein. 20 5.7
AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less prot... 20 5.7
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 19 7.5
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 19 7.5
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 19 7.5
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 19 7.5
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 19 7.5
AY873916-1|AAW67572.1| 377|Tribolium castaneum chitinase 6 prot... 19 9.9
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 22.6 bits (46), Expect = 0.81
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 138 TTRLAPSSRPSWVALATRVSWSAWDRRTLT----SVMRPRAREVSSP 266
TTR ++RP+ + TR + + W + T +V+ P + S P
Sbjct: 1056 TTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVDKPSQP 1102
Score = 19.8 bits (39), Expect = 5.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 171 WVALATRVSWSAWDRRT 221
WVA+ T WD++T
Sbjct: 1584 WVAVMTYDFHGQWDKQT 1600
Score = 19.0 bits (37), Expect = 9.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = +3
Query: 171 WVALATRVSWSAWDRRT 221
W+A+ T WD++T
Sbjct: 2507 WIAVMTYDFHGHWDKQT 2523
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 20.2 bits (40), Expect = 4.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 8 VSLP*SQYPPRPDTKTHAKMCDDDV 82
V P + P PD H+ + D DV
Sbjct: 643 VMAPSTCQPQNPDNDVHSIVDDSDV 667
>DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein.
Length = 314
Score = 19.8 bits (39), Expect = 5.7
Identities = 6/15 (40%), Positives = 7/15 (46%)
Frame = -2
Query: 210 PMPTMTPWWRGRPTM 166
P P WW G +M
Sbjct: 262 PYPVYNQWWSGPLSM 276
>AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less
protein.
Length = 312
Score = 19.8 bits (39), Expect = 5.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 131 AGDDAPRAVFPSIVGRPRHQGVMVG 205
AG +PR + RP HQ G
Sbjct: 62 AGFPSPRGALGAYPFRPMHQNSYTG 86
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 19.4 bits (38), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 88 RSNIVVAHFGVCFCV 44
++N+VV H G C V
Sbjct: 105 QTNVVVKHGGSCLYV 119
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 19.4 bits (38), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 88 RSNIVVAHFGVCFCV 44
++N+VV H G C V
Sbjct: 105 QTNVVVKHGGSCLYV 119
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 19.4 bits (38), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 88 RSNIVVAHFGVCFCV 44
++N+VV H G C V
Sbjct: 105 QTNVVVKHNGSCLYV 119
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 19.4 bits (38), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 88 RSNIVVAHFGVCFCV 44
++N+VV H G C V
Sbjct: 105 QTNVVVKHNGSCLYV 119
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 19.4 bits (38), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 88 RSNIVVAHFGVCFCV 44
++N+VV H G C V
Sbjct: 105 QTNVVVKHGGSCLYV 119
>AY873916-1|AAW67572.1| 377|Tribolium castaneum chitinase 6
protein.
Length = 377
Score = 19.0 bits (37), Expect = 9.9
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +2
Query: 71 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI 169
+DD + L++DN + + G A + P++
Sbjct: 61 NDDGSLLILDNATDITNGGLQKVAALKKTNPAL 93
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,326
Number of Sequences: 336
Number of extensions: 1328
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used: 4684108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
- SilkBase 1999-2023 -