Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B06
(280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 142 6e-36
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 81 4e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 65 2e-12
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 9e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 41 4e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 36 8e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.001
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.030
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 28 0.28
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 2.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 2.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 2.6
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 24 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 3.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 3.5
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 4.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 23 6.1
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.0
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 23 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 142 bits (345), Expect = 6e-36
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +2
Query: 71 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 250
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 251 RGILTLKYPI 280
RGILTLKYPI
Sbjct: 62 RGILTLKYPI 71
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 80.6 bits (190), Expect = 4e-17
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +2
Query: 77 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 256
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 257 ILTLKYPI 280
+L ++ PI
Sbjct: 68 LLKIQRPI 75
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 64.9 bits (151), Expect = 2e-12
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Frame = +2
Query: 83 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 256
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 257 ILTLKYPI 280
+L +KYP+
Sbjct: 64 LLQVKYPM 71
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.7 bits (96), Expect = 9e-06
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 89 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 238
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.7 bits (91), Expect = 4e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 74 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 175
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.3 bits (80), Expect = 8e-04
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 74 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 244
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 89 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 184
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.030
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 134 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 277
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 0.28
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 21 RVNIHRVPTQKHTPKCATTMLLRS*LTMAPACAKPVSPV----TTRLAPSSRPSWVALAT 188
RVN+ P K PKC + LT++ + P++P+ T +L S P +
Sbjct: 11 RVNVFLDPETKDIPKCVADLKFPLPLTLSR--STPINPIIRSDTIQLVISCPPVTYSDEI 68
Query: 189 RVSWSAWD 212
+V W A D
Sbjct: 69 QVPWKAID 76
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 2.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 194 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 280
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 2.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 101 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 253
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 2.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 89 LVVDNGSGMCKAGFAG 136
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 2.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 238 LITDVRVLLSHADHDTLVARATHDGREDGARRVVTG 131
++TD R+LL + H T DG DGA V+TG
Sbjct: 85 IVTDARLLLCNMTHRGATGADTRDG--DGA-GVMTG 117
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 3.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 75 TMLLRS*LTMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 209
T+LL+S L +C+K T+ A S+ W+A + AW
Sbjct: 99 TILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQWIAENLGSGFWAW 143
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 177 RPTMDGKTARGASSPAKPALHMPEPL 100
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 239 PHHRRKSPSVP 207
PHHR +SPS P
Sbjct: 125 PHHRERSPSPP 135
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 147 LAPSSRPSWVALATRVSWSAWDRR 218
L P S P+W+++ V AW R
Sbjct: 158 LFPQSFPTWISVYRNVPEKAWANR 181
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 23.4 bits (48), Expect = 6.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 210 PMPTMTPWWRG 178
P+ MTPW+RG
Sbjct: 914 PLEIMTPWYRG 924
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 9 SRCRRVNIHRVPTQKH 56
S C + ++HR P +KH
Sbjct: 763 STCAKTDLHRKPRRKH 778
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 41 PDTKTHAKMCDDDVAALVVDNGSGMCKAGFA 133
PD KT AKM +D L + G G A
Sbjct: 267 PDAKTFAKMIEDAGFTLAGETGYETLSFGIA 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,205
Number of Sequences: 5004
Number of extensions: 22698
Number of successful extensions: 69
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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