Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B06
         (280 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   0.70 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   0.92 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   2.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   2.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   6.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   6.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   8.6  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 0.70
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 76 VVAHFGVCFCVGTRWILTLRQR 11
          +V  FG C CVG   I  L+ R
Sbjct: 4  IVLIFGFCVCVGALTIEELKTR 25


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 0.92
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 44  DTKTHAKMCDDDVAALVVDNGSGMCKAGFAGD 139
           D K    + D D    + D   GMCK G +GD
Sbjct: 110 DLKLDNVLLDQDGHIKIAD--FGMCKEGISGD 139


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 39  VPTQKHTPKCAT 74
           VP+ KH  KCAT
Sbjct: 160 VPSVKHVAKCAT 171


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   TRSRCRRVNIHRVPTQKHTPKCAT 74
           T S+C + ++H    Q H+  C T
Sbjct: 361 TPSKCSQTSVHYSNGQTHSQLCPT 384


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 175 SPSPPGCHGRHG 210
           +P PPG  G HG
Sbjct: 331 NPGPPGVPGDHG 342



 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 172 GSPSPPGCHGRH 207
           G P  PG HG H
Sbjct: 333 GPPGVPGDHGDH 344


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 175 SPSPPGCHGRHG 210
           +P PPG  G HG
Sbjct: 331 NPGPPGVPGDHG 342



 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 172 GSPSPPGCHGRH 207
           G P  PG HG H
Sbjct: 333 GPPGVPGDHGDH 344


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 175 SPSPPGCHGRHG 210
           +P PPG  G HG
Sbjct: 270 NPGPPGVPGDHG 281



 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 172 GSPSPPGCHGRHGTEGLLR 228
           G P  PG HG H  +  +R
Sbjct: 272 GPPGVPGDHGDHAPKQTVR 290


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 99  TMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 209
           TM P  A  +    T LAPS+    +       +S W
Sbjct: 79  TMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVW 115


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 190 GCHGRHGTEGL 222
           G HG HG  GL
Sbjct: 133 GLHGLHGLHGL 143



 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 190 GCHGRHGTEGL 222
           G HG HG  GL
Sbjct: 136 GLHGLHGLHGL 146


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 248 CSGPHHRRKSPSVPCRP 198
           C G   RR  P+  C+P
Sbjct: 409 CPGRVRRRYQPAFRCKP 425


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 88  RSNIVVAHFGVCFCV 44
           ++N+VV H G C  V
Sbjct: 156 QTNVVVTHNGSCLYV 170


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 88  RSNIVVAHFGVCFCV 44
           ++N+VV H G C  V
Sbjct: 156 QTNVVVTHNGSCLYV 170


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 32  PPRPDTKT 55
           PP+P TKT
Sbjct: 250 PPKPQTKT 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,490
Number of Sequences: 438
Number of extensions: 1754
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)