Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B05
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 74 2e-14
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 62 9e-11
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 46 5e-06
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 43 3e-05
07_01_0479 + 3606663-3607448 31 0.20
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 31 0.20
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 30 0.26
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 30 0.34
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 29 0.80
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 27 1.8
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 26 4.2
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 26 4.2
02_02_0068 + 6536756-6537253 25 7.4
01_06_1056 + 34139467-34140013,34141437-34142338 25 7.4
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 25 7.4
09_03_0160 - 12915283-12915453,12915546-12915713,12915944-129159... 25 9.8
08_02_0426 - 16987352-16987841,16989537-16989640 25 9.8
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 25 9.8
06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124 25 9.8
02_02_0602 + 12053929-12054081,12054241-12054498,12054611-120547... 25 9.8
01_06_1405 + 37070395-37070484,37070599-37070700,37071403-370714... 25 9.8
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 107 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGM 283
MS++ PP+LKK+MDKKL IKLNA R + G LRGFD FMNLV+D +V E + +IGM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 284 V 286
V
Sbjct: 60 V 60
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 61.7 bits (143), Expect = 9e-11
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 15/75 (20%)
Frame = +2
Query: 107 MSKA-HPPELKKFMDKKLS--------------IKLNAGRAVTGVLRGFDPFMNLVLDES 241
MS++ PP+LKK+MDKKL +KLNA R V G LRGFD FMNLV+D +
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 242 VEECKDGQRNNIGMV 286
V E ++N+IGMV
Sbjct: 61 V-EVNGNEKNDIGMV 74
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 7/47 (14%)
Frame = +2
Query: 128 ELKKFMDKKLSIKLNAGR-------AVTGVLRGFDPFMNLVLDESVE 247
+L KF+DK + +KL GR +VTG L+G+D +NLVLDE+VE
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVE 56
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 125 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
P L+ +D+ +S+ N GR + G LRGFD N++LDES E
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>07_01_0479 + 3606663-3607448
Length = 261
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
MS ++ +F++ ++ + + GR + G FD MNLVL + E
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 200 RGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+GFD +MNLVLDE+ E K R ++G +
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRI 126
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R ++G +
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRI 64
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 29.9 bits (64), Expect = 0.34
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 125 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNIGMV 286
P L K + +KL G G L D +MNL L + EE DGQ N+G +
Sbjct: 61 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEI 114
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 28.7 bits (61), Expect = 0.80
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 209 DPFMNLVLDESVEECKDGQRNNI 277
DPF N ++ + +EEC D QR I
Sbjct: 466 DPFGNYLVQKLLEECSDDQRTRI 488
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
+ + + K+ + + + + G L GFD ++N+VL++ E
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122
>07_01_0247 +
1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 128 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGM 283
E + F D++L KL + ++ L + + +ES++ K+ Q ++GM
Sbjct: 197 EAEPFADEQLKAKLTSMQSELVQLENEEEEKDKKTEESIQRFKEAQEESLGM 248
>05_07_0003 +
26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 113 KAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNI 277
KA L ++ D ++ + AG A P MNLV E V+ G R+++
Sbjct: 17 KAGLHRLFRYADGVDALLMAAGAAGAAASGAAQPLMNLVFGEVVDAFGSGSRDDV 71
>02_02_0068 + 6536756-6537253
Length = 165
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 172 RRQSCDRCVERF*SFYESGARRVRRRMQRWST*QHRDGG 288
RR RC R+ E G RR +RW R GG
Sbjct: 107 RRLEARRCCRRWRRGEEEGGAAKRRTARRWGRRLWRRGG 145
>01_06_1056 + 34139467-34140013,34141437-34142338
Length = 482
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 160 DKT*RRQSCDRCVERF*SFYESGARRVRRRMQRWST*QHR 279
D+ RR+ R V+R + E+ + +RR W HR
Sbjct: 420 DRLIRREEIARAVKRLMASEEAEMKAIRRHALEWKEISHR 459
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 268
LK + ++L G G L D +MN+ L E + KDG +
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDK 52
>09_03_0160 -
12915283-12915453,12915546-12915713,12915944-12915957,
12916051-12916153,12917359-12917445,12917741-12918013
Length = 271
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 192 PVTALPALSFIDSFLSMNFFNSG-GCALDML 103
P+TA A++++D FLS+ G G A+ +L
Sbjct: 100 PLTAYLAVNYMDRFLSLRHLPEGQGWAMQLL 130
>08_02_0426 - 16987352-16987841,16989537-16989640
Length = 197
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -3
Query: 172 VKFYRQFLIHELF*FWWVCFRHVE 101
V YR FL H L WW +E
Sbjct: 10 VNKYRAFLCHHLACIWWSMIEAIE 33
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 122 PPELKKFMDKKLSIKLNAGRAVTG 193
P E+K+F+ K + IK+N + + G
Sbjct: 342 PSEVKEFLRKLVKIKINGDKGLIG 365
>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
Length = 904
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 210 SKPLNTPVTALPALSFIDSFLSMNFFNSGGCALDM 106
S + TPV+ +P L + L ++FF A D+
Sbjct: 805 SAAVTTPVSVMPYLELLHFSLDVHFFKDRKIAFDI 839
>02_02_0602 +
12053929-12054081,12054241-12054498,12054611-12054712,
12054879-12055034,12055413-12055482,12055782-12055936,
12056011-12056100,12056183-12056254,12056409-12056468
Length = 371
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 219 IKGSKPLNTPVTALPALSFIDSFLSMNFFN 130
++ SKPL VT P+L FI S+ +N
Sbjct: 272 LQTSKPLQLAVTEDPSLVFIPCMASIKAYN 301
>01_06_1405 +
37070395-37070484,37070599-37070700,37071403-37071472,
37071772-37071926,37072003-37072092,37072701-37072736
Length = 180
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 219 IKGSKPLNTPVTALPALSFIDSFLSMNFFN 130
++ SKPL VT P+L FI S+ +N
Sbjct: 113 LQTSKPLQLAVTEDPSLVFIPCMASIKAYN 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,782,684
Number of Sequences: 37544
Number of extensions: 105552
Number of successful extensions: 245
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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