Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B05
(288 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 105 3e-23
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 105 3e-23
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 105 3e-23
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 105 3e-23
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 105 3e-23
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 105 3e-23
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 105 3e-23
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 105 3e-23
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 105 3e-23
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 79 2e-15
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 54 1e-07
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 54 1e-07
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 54 1e-07
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 39 0.003
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.003
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.003
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 39 0.003
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 39 0.003
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 39 0.003
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 38 0.008
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 38 0.008
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 38 0.008
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 36 0.024
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 36 0.024
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 36 0.024
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 36 0.024
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 34 0.072
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 34 0.072
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 34 0.072
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 31 0.89
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 31 0.89
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 31 0.89
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 31 0.89
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 31 0.89
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 31 0.89
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 31 0.89
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 27 8.3
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 27 8.3
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 27 8.3
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 27 8.3
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 27 8.3
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 27 8.3
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 27 8.3
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 27 8.3
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 27 8.3
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 27 8.3
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 27 8.3
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 27 8.3
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 105 bits (252), Expect = 3e-23
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +2
Query: 143 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNIGMV 286
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NNIGMV
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 48
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +2
Query: 128 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 259
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +2
Query: 128 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 259
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +2
Query: 128 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 259
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2
Query: 131 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 176 GRAVTGVLRGFDPFMNLVLDESVEECKD 259
GR +G+L+GFDP +NLVLD ++E +D
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRD 99
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 143 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 268
+DKK + L GR + G LR D F NLVL ++VE G++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK 55
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 143 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 268
+DKK + L GR + G LR D F NLVL ++VE G++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK 55
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 143 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 268
+DKK + L GR + G LR D F NLVL ++VE G++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK 55
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 104 NMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKN 58
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 104 NMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKN 58
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 104 NMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKN 58
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 104 NMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ N
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKN 58
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 104 NMSKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
N S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 104 NMSKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
N S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 104 NMSKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 247
N S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 66
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNIGMV 286
+ G + GFD +MNLVLD++ E K R +G +
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 107 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 274
M+ ++ + +D ++ L GR G + FD MNL+L + E K +N+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNS 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,135,612
Number of Sequences: 237096
Number of extensions: 519330
Number of successful extensions: 967
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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