Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B05
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   0.75 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.75 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   7.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   7.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    19   9.2  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 179 RAVTGVLRGFDPFMNLVLDESVEECKD 259
           R V   + GFDP++    DE +E+  D
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTD 251


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 251 ILLRTRLAPDS*KDQNLSTHRSQL 180
           +LL+ RL P+S    +L++H S L
Sbjct: 267 LLLKARLNPNSSLQPSLASHHSHL 290


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 206 FDPFMNLVLDESVE 247
           +DP + LV+DE++E
Sbjct: 195 WDPDVPLVVDENIE 208


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 193 TGHSSAGVKFYRQFLIHELF*FWWVCFRHVEV 98
           +GH  + V  Y   ++     FW++C  HV +
Sbjct: 767 SGHYDSSVDVYAFGIL-----FWYLCAGHVRL 793


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 193 TGHSSAGVKFYRQFLIHELF*FWWVCFRHVEV 98
           +GH  + V  Y   ++     FW++C  HV +
Sbjct: 805 SGHYDSSVDVYAFGIL-----FWYLCAGHVRL 831


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 225 RFIKGSKPLNTPVTAL 178
           RF+K  +P N   T+L
Sbjct: 187 RFLKNPRPCNVLATSL 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,289
Number of Sequences: 438
Number of extensions: 1038
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)