Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B03
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.21 
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     29   0.28 
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   0.86 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   1.1  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   2.0  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    26   2.0  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   2.6  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   4.6  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    24   6.1  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    24   8.0  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   8.0  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    24   8.0  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    24   8.0  

>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 78  DLPLLTAFXSPHLKTSAMLKSPPQIDSHYS 167
           DLP + +F +P    + + K PP ++ H+S
Sbjct: 75  DLPYVLSFSAPECVKNEIFKIPPPLNEHFS 104


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 117 KTSAMLKSPPQIDSHYSRAADAH--SHDHEQEQKE 215
           K S   + PPQID H S  AD +  S+   QE KE
Sbjct: 259 KNSGRPQKPPQIDPHSSSLADEYRESNKRLQESKE 293


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 114 LKTSAMLKSPPQIDSHYSRAADAHSH-DHEQEQKEEPTQGPYEDDDGMVGEEPV 272
           L  S  L S  + D   S+  D+ S  D E+E   EP    Y++DD  V  E V
Sbjct: 83  LAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIV 136


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 HSHDHEQEQKEEPTQGPYEDDDGMVGEEPVG 275
           H+H HE    ++P    +ED+  +V ++P G
Sbjct: 92  HAHRHEPPVSDQPVGIVHEDESYVVIDKPAG 122


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 118 KPARC*NLRLRSILITRAPPTLTRTTMNRSKKKNPLRVLMKMTTVWWVRSLWVIYL-TRG 294
           +P+   N  + ++L+T    T+   ++N    +NP R+L     +W++     IY+ +  
Sbjct: 312 QPSSSRNSWIFTLLLTFTQLTIFYLSLN-CLIENPYRMLRNTFPIWFIMQTLQIYIQSPR 370

Query: 295 PAMLPVRMM 321
           P + P R++
Sbjct: 371 PPLTPKRLL 379


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 153 DSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGEEPVGYL 281
           D HYS       +  E    E P    +ED D +  E+ + YL
Sbjct: 315 DMHYSAVPVPFLNGDEPRDYELPPLASFEDIDNLTKEQCIQYL 357


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 135 KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVG 260
           KSP  +D H     +    D+E EQ  +     YE D+ + G
Sbjct: 6   KSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKG 47


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 171  AADAHSHDHEQEQKEEPTQGPYEDD 245
            A+DA   D E+E+ EE ++   E+D
Sbjct: 952  ASDADPSDEEEEESEEYSEDASEED 976


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 MVGEEPVGYLSNE 290
           M G+EP GYLSN+
Sbjct: 378 MFGKEPEGYLSNQ 390


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 135 KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDG 251
           +S P +        DA      Q Q+E+  QGP  DDDG
Sbjct: 133 ESNPPVLVEDETIVDAEDGGAAQNQQEKQ-QGPIVDDDG 170


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 123 SAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQ 227
           SA L   PQ+  H S+     S+DH  + +++ T+
Sbjct: 387 SADLSITPQVTEHDSKPPVRISYDHRCKTRKQSTR 421


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 198 EQEQKEEPTQGPYEDDDGMV 257
           +++++E+P  G  EDDD +V
Sbjct: 201 DKDEEEKPWSGDEEDDDELV 220


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 192 DHEQEQKEEPTQGPYEDDDGMV 257
           + E+E+KE+P    Y++ +G V
Sbjct: 281 EEEEEEKEKPEISNYDETEGKV 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,610
Number of Sequences: 5004
Number of extensions: 20023
Number of successful extensions: 99
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)