Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B03
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1193 + 26891619-26892456,26892545-26893884 28 1.9
09_04_0367 - 16978069-16978085,16978514-16978611,16979069-169792... 28 2.5
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 28 2.5
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 27 3.3
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 4.3
05_04_0073 + 17669311-17671635 27 4.3
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 4.3
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 27 4.3
07_01_0734 + 5590932-5591501 27 5.7
02_05_0772 - 31643142-31643329,31643650-31643683,31644037-316442... 27 5.7
05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386 26 7.6
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 26 7.6
02_05_0989 - 33343233-33344417 26 7.6
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 26 7.6
02_03_0364 + 18191769-18192326 26 7.6
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 26 7.6
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 141 PPQIDSHYSRAADAHSHDHEQEQKEE 218
PP DS DA HD E+E++EE
Sbjct: 356 PPSSDSDADDEDDAEEHDGEEEREEE 381
>09_04_0367 -
16978069-16978085,16978514-16978611,16979069-16979229,
16979320-16979548,16979731-16980593
Length = 455
Score = 27.9 bits (59), Expect = 2.5
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 18 TRAPSTCRLTLDSPT--SSASFDLPLLTAFXSPHLKTSAMLKSPPQIDSHYSRAADAHSH 191
TR PS+ L SPT + ASF ++ K A K PP + H RAA +H
Sbjct: 22 TRTPSSL---LRSPTVRNCASFQAVVVEDPEPDDKKEQAQAKPPPHLHPHLLRAAAVPAH 78
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 145 LRSILITRAPPTLTRTTMNRSKKKNPLRVLMKMTTVWWVRSLWVIYLT 288
L +I T A P R N+ K NPL+ + W+ L+VI T
Sbjct: 505 LMAIAFTLAQPWFRR---NKLKDSNPLKKMTGFNAFWFTHHLFVIVYT 549
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 93 TAFXSPHL-KTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVG 260
T + PH K LK P + AAD+ + ++EE + P E+ DG +G
Sbjct: 258 TEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLG 314
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +3
Query: 138 SPPQIDSH---YSRAADAHSHDHEQEQKEEPTQGPYED 242
SPP SH YSR+ H HDH + + P G +D
Sbjct: 556 SPPG-QSHSRSYSRSHSLHLHDHARTRSCSPAPGRQDD 592
>05_04_0073 + 17669311-17671635
Length = 774
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 135 KSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGP 233
+ PP +D+ S A AH + ++E PT P
Sbjct: 639 RQPPHMDTRLSHAESAHPDELDEEFDTFPTSRP 671
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +3
Query: 57 PTSSASFDLPLLTAFXSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPY 236
PT+ + P L A + S L SPP S + + E+E++++ +
Sbjct: 69 PTNPSPPPPPPLDADAAAEAAPSPALTSPPPNPSSSPLPPTDTTEEEEEEEEDDGLDPLF 128
Query: 237 EDDDGMVGEEPVG 275
+ G G +P+G
Sbjct: 129 SETFGAAGWDPLG 141
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 27.1 bits (57), Expect = 4.3
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 30 STCRLTLDSPT-SSASFD-LPL-LTAFXSPHLKTSAMLKSPPQIDSHYSRAADAHSHDHE 200
S + SPT ++A F LPL L P L TS +L P+ S ++ +
Sbjct: 9 SAMAVAATSPTIATAPFSSLPLRLRLRPKPLLFTSRLLLPVPKSSSWVESVSEEGEEEGV 68
Query: 201 QEQKEEPTQGPYEDDDGMVGEE 266
+E EE + EDDDG +E
Sbjct: 69 EEDSEE-SGAAGEDDDGEDNDE 89
>07_01_0734 + 5590932-5591501
Length = 189
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 171 AADAHSHDHEQEQKEEPTQGPYEDDDGM---VGEEPVG 275
AA+ + + E+E++EEP + + DDG VG + VG
Sbjct: 33 AAEPYEVEMEEEEEEEPQEVEFAADDGSDDDVGGDLVG 70
>02_05_0772 -
31643142-31643329,31643650-31643683,31644037-31644221,
31644483-31645146
Length = 356
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 189 HDHEQEQKEEPTQGPYEDDDGMVGEEPVGY 278
HD EQE E G EDDD + E + Y
Sbjct: 119 HDKEQESSLESEGGCEEDDDDDMDSEYLAY 148
>05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386
Length = 277
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 156 SHYSRAADAHSHDHEQEQKEEPTQG 230
S R H+HDHE E + E +G
Sbjct: 185 SFCGRQEQEHAHDHEDEHQHEHLEG 209
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 192 DHEQEQKEEPTQGPYEDDDGMVGEEPVGYLSN 287
+ E+E++EE + P ED+D G + V +S+
Sbjct: 411 EEEEEEEEEEEEEPMEDEDMEDGMQSVDTISS 442
>02_05_0989 - 33343233-33344417
Length = 394
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 118 KPARC*NLRLRSILITRAPPTLTRTTMN 201
KPA+ +RLR +I+ APP T N
Sbjct: 6 KPAKAPAIRLRLSIISLAPPNCTHLQFN 33
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -2
Query: 261 HPPYRRHLHKDPEWVLL-FAPVHG 193
HP H+ P WV++ + P HG
Sbjct: 35 HPHAHHHIQAQPRWVVIPYPPPHG 58
>02_03_0364 + 18191769-18192326
Length = 185
Score = 26.2 bits (55), Expect = 7.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 24 APSTCRLTLDSPTSSASFDLPLLTAFXSPHLKTSAMLK-SPPQIDSHYSRAADAHSHDHE 200
AP+T R D ++A+ P P L S ++ PP ++R A A +
Sbjct: 23 APTTPR---DDDGAAATLFPPAQPPRDHPQLDLSLSIRIGPPPPPPSHTRTATATAQAQA 79
Query: 201 QEQKEEPTQGPYEDDDG 251
+QK+ ++D DG
Sbjct: 80 GQQKKASAAAGFDDGDG 96
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 26.2 bits (55), Expect = 7.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 120 TSAMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDDGMVGEEPVGYLSNE 290
TS ML+ QI++ + H ++E E ED+D + E+ YL+NE
Sbjct: 302 TSNMLQQDSQINT-ITAIEQVEQHVGQEETTSETKATSAEDNDTINEEDINNYLANE 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,985,139
Number of Sequences: 37544
Number of extensions: 163324
Number of successful extensions: 776
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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