Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B03
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   7.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 261 HPPYRRHLHKDPEWVLLFAP 202
           HP YR+ L K  +W+ +  P
Sbjct: 340 HPRYRQELQKRCKWMGIHEP 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 261 HPPYRRHLHKDPEWVLLFAP 202
           HP YR+ L K  +W+ +  P
Sbjct: 340 HPRYRQELQKRCKWMGIHEP 359


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +3

Query: 126 AMLKSPPQIDSHYSRAADAHSHDHEQEQKEEPTQGPYEDDD 248
           A  ++ PQ      +         +Q+Q+++  +GP  +DD
Sbjct: 824 AQAQAQPQ-QQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDD 863


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 PPTLTRTTMNRSKKKNPLRVLMK 240
           PPTLT + +NR  +     +++K
Sbjct: 636 PPTLTESLLNRHNEDMEKLMMLK 658


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 KEEPTQGPYEDDDGMVGEEPVGY 278
           K++ T+G  +  D +V  EP+ Y
Sbjct: 191 KDDGTEGIAKSGDVLVETEPIYY 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,238
Number of Sequences: 438
Number of extensions: 1377
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)