Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A24
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    23   7.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   7.4  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 97  SNLSNHKQLNH*NVDPKXTP 38
           +N++ HKQ+NH   +   TP
Sbjct: 548 ANIAGHKQMNHLTSENIETP 567


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 105 FFVQILAIINN*ITKMLTQNXHQHSRYNYYND 10
           FF + + +IN  I + L +   ++ R +YYN+
Sbjct: 301 FFRRKVDLINKFIGQRLMETYSRNKRKHYYNN 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,102
Number of Sequences: 5004
Number of extensions: 4017
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)