Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A24
         (119 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF016686-11|AAB66235.1|  205|Caenorhabditis elegans Hypothetical...    25   7.5  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    25   9.9  

>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 111 TFFFVQILAIINN*ITKMLTQN 46
           TFFFV +  II+  ITKM+ ++
Sbjct: 437 TFFFVAVSGIIHPIITKMIVKD 458


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 111 TFFFVQILAIINN*ITKMLTQN 46
           TFFFV +  II+  ITKM+ ++
Sbjct: 423 TFFFVAVSGIIHPIITKMIVKD 444


>AF016686-11|AAB66235.1|  205|Caenorhabditis elegans Hypothetical
           protein R07C3.5 protein.
          Length = 205

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 93  ILAIINN*ITKMLTQNXHQHSRYNYYNDTV 4
           +L ++ N     L  N   H+RY YY D V
Sbjct: 84  LLLVVPNTENMHLISNKRVHARYFYYKDDV 113


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  SNHKQLNH*NVDPKXTPTQSI 26
           S+  Q+N  NVD K TP+ SI
Sbjct: 526 SSKDQINRNNVDVKRTPSSSI 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,926
Number of Sequences: 27780
Number of extensions: 24158
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)