Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A23
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0722 - 19014505-19014600,19014705-19014853,19015321-19015327     25   8.4  

>04_03_0722 -
          19014505-19014600,19014705-19014853,19015321-19015327
          Length = 83

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 2  LVRKKRREEKNLI*ENWKVL 61
          L+ +KRR++KN+   NW  L
Sbjct: 39 LIHEKRRQQKNMYLLNWTTL 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.141    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,029
Number of Sequences: 37544
Number of extensions: 14705
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 14,793,348
effective HSP length: 28
effective length of database: 13,742,116
effective search space used: 261100204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)