Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A22
(287 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 79 1e-16
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 75 2e-15
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 0.41
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 0.72
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 1.7
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 2.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 2.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 3.8
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 24 3.8
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 23 6.7
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 23 6.7
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 23 8.8
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 8.8
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 23 8.8
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 79.4 bits (187), Expect = 1e-16
Identities = 37/86 (43%), Positives = 58/86 (67%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 209
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 210 KKELAAVRTVCSHVENMIKGVTKGFQ 287
+K A +RT S + NMI GVT+GF+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFR 87
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 75.4 bits (177), Expect = 2e-15
Identities = 35/86 (40%), Positives = 57/86 (66%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 209
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 210 KKELAAVRTVCSHVENMIKGVTKGFQ 287
+K A +R+V S + NMI GVT+GF+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFR 87
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 0.41
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 55 TFWFATICFILGLCLT 8
TFWF +IC IL +C +
Sbjct: 281 TFWFQSICLILYICFS 296
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 0.72
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +3
Query: 90 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 269
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 270 VTK 278
++K
Sbjct: 1170 LSK 1172
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 223 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 134
+SS PNH ++ RGLT ST K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 2.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 64 GIFTFWFATICFILGLCLTL 5
G+ WFA +CF G LT+
Sbjct: 276 GVVLIWFAWLCFNSGTLLTV 295
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 2.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 125 NSARTFHCHQTRFHMDGETLRNLH 54
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.2 bits (50), Expect = 3.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 138 FKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 275
F H +VD+ + + E WF + T+CS + N++ VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 3.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 146 VFEVSF*NSARTFHCHQTRFHMDGETLRNLH 54
V E S N A+ FH R + G L NLH
Sbjct: 144 VIEFSSPNIAKPFHAGHLRSTIIGSFLANLH 174
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 89 FHMDGETLRNLHLLVCN 39
FHMD L N+ L+VC+
Sbjct: 542 FHMDDVPLDNIPLVVCD 558
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 23.4 bits (48), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 209 RTEPFLHFQLARINHANVNS 150
RT FL L +NH NVNS
Sbjct: 80 RTSSFLCGALDDLNHVNVNS 99
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 236 SMLSCRKHDQRCDQGIP 286
S L+CR+ +CD G P
Sbjct: 22 SCLACRRKKLKCDHGRP 38
>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 23.0 bits (47), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 120 REDLSLSPNAISHGR*DSQES 58
R+ S +PNAI HGR S+++
Sbjct: 8 RKSASKAPNAIIHGRVASKKT 28
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 166 WLILAS*KWRNGSVLKKN 219
WL +A+ W N S+L+K+
Sbjct: 313 WLAIATLPWYNWSILEKS 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,910
Number of Sequences: 5004
Number of extensions: 20822
Number of successful extensions: 57
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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