Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A21
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    42   1e-05
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   1.8  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    23   5.4  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        22   9.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        22   9.5  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 41.9 bits (94), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 23  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRK 154
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRK
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRK 46


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 30  TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAE 137
           T      H  +N +  KFT+      L  GTP + E
Sbjct: 195 TMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVE 230


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 104 FCTETLCELCDICIFCSMFCAV 39
           F +ETLC  C IC+    F A+
Sbjct: 49  FISETLCIGCGICVKKCPFGAI 70


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 5/19 (26%), Positives = 10/19 (52%)
 Frame = -2

Query: 101 CTETLCELCDICIFCSMFC 45
           C    C +C + + C ++C
Sbjct: 30  CYPLYCVVCFVSVLCRLYC 48


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 60  KNANVTKFTKCLSTKSLR 113
           KN+ V+K  KCL  +++R
Sbjct: 291 KNSEVSKTCKCLQKETIR 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,221
Number of Sequences: 5004
Number of extensions: 6177
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)