Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A21
(156 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 44 2e-05
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 44 2e-05
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 44 2e-05
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 42 9e-05
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 42 9e-05
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 42 9e-05
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 42 9e-05
11_01_0266 - 2010572-2011879 26 3.6
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 25 8.3
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
MVNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 46
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
MVNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 46
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
MVNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 46
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 26 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
VNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 74
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 26 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
VNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 74
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 26 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
VNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 73
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 26 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRK 154
VNVPK ++TY +QYKK K+ +AQG+RRYDRK
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRK 74
>11_01_0266 - 2010572-2011879
Length = 435
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 92 SQYKKSKERHAAQGRRRYDR 151
S+ +K+++RH A+G+ YD+
Sbjct: 3 SEKRKTRDRHGARGKASYDK 22
>12_01_0672 +
5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 107 TFCTETLCELCDICIFCS 54
TF T C+ CD+C CS
Sbjct: 146 TFDTSIACDSCDLCGDCS 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,048
Number of Sequences: 37544
Number of extensions: 41739
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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