Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A21
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    47   2e-06
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    47   2e-06
Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical p...    26   3.1  
AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine re...    25   5.5  
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    25   7.3  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    25   7.3  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRK 154
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRK
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRK 45


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRK 154
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRK
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRK 45


>Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical
           protein ZK643.6 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 CTETLCELCDICIFCSMFCAVWVRSPFLRLF 9
           C +T C  C+IC   +  C +WV   F   F
Sbjct: 134 CPKT-CNACNICEDANKMCPIWVPRGFCSKF 163


>U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK1248.15 protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 30  TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAED 140
           TYP+S   +++N NV K TK     S R   PL   D
Sbjct: 426 TYPSSTYQSSQNGNVVKTTK---PNSNRPKIPLSLSD 459


>AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein60 protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 104 FCTETLCELCDICIFCSMFCAVWVRSPFLRLFPR 3
           FC E L  L    I  + FCAVWV   + + F R
Sbjct: 85  FCYE-LSVLTHFLISINRFCAVWVPLKYEKWFSR 117


>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
          amphipath transporters(subfamily iv p-type atpase)
          protein 2, isoform b protein.
          Length = 1051

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 80 LCDICIFCSMFCAVW 36
          L  +C+ C++ CAVW
Sbjct: 29 LIAMCLICTILCAVW 43


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 80  LCDICIFCSMFCAVW 36
           L  +C+ C++ CAVW
Sbjct: 200 LIAMCLICTILCAVW 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,707
Number of Sequences: 27780
Number of extensions: 40747
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)