Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A21
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   3.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   3.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   4.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   4.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    19   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   4.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   4.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    19   5.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   7.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    18   9.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    18   9.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    18   9.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    18   9.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 44  AVWVRSPFLRLFPR 3
           A WVR  F+ + PR
Sbjct: 338 APWVRRVFIHVLPR 351


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 44  AVWVRSPFLRLFPR 3
           A WVR  F+++ PR
Sbjct: 334 ARWVRVVFIQVLPR 347


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 44  AVWVRSPFLRLFPR 3
           A WVR  F+R  P+
Sbjct: 333 APWVRKIFIRRLPK 346


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 83  ELCDICIFCSMFCAVWV 33
           E+  + IF  ++C++W+
Sbjct: 126 EVFKVWIFGDLWCSIWL 142


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 44  AVWVRSPFLRLFPR 3
           A WV+  F+ + PR
Sbjct: 342 APWVKRVFIHILPR 355


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 44  AVWVRSPFLRLFPR 3
           A WV+  F+ + PR
Sbjct: 342 APWVKRVFIHILPR 355


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  QYKKSKERHAAQGRRRYDRK 154
           +Y+K +ER   + R R +R+
Sbjct: 288 EYRKYRERSKERSRDRTERE 307


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 38  WVRSPFLRLFPR 3
           WVR  FL   PR
Sbjct: 349 WVRQVFLNWMPR 360


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 66  ANVTKFTKCLSTKSLRKGT 122
           A V  F KC    S+R+GT
Sbjct: 14  AIVFLFDKCSGYPSIRQGT 32



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 101 CTETLCELCDICIFCS 54
           C E +   C+ CI CS
Sbjct: 79  CAEGMQCSCNKCIGCS 94


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  QYKKSKERHAAQGRRRYDRK 154
           +Y+K +ER   + R R +R+
Sbjct: 55  KYRKYRERSKERSRDRTERE 74


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  QYKKSKERHAAQGRRRYDRK 154
           +Y+K +ER   + R R +R+
Sbjct: 55  KYRKYRERSKERSRDRTERE 74


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 104  KSKERHAAQGRRRYDRK 154
            K KERH  + R+R D+K
Sbjct: 1079 KVKERHLMRPRKR-DQK 1094


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
          protein.
          Length = 169

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 62 FCSMFCAVWVRSPF 21
          FC  FC   V +PF
Sbjct: 44 FCLPFCGPNVINPF 57


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
          protein.
          Length = 168

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 62 FCSMFCAVWVRSPF 21
          FC  FC   V +PF
Sbjct: 43 FCLPFCGPNVINPF 56


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  QYKKSKERHAAQGRRRYDRK 154
           +Y+K +ER   + R + +R+
Sbjct: 55  EYRKYRERSKERSRDKRERE 74


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  QYKKSKERHAAQGRRRYDRK 154
           +Y+K +ER   + R + +R+
Sbjct: 55  EYRKYRERSKERSRDKRERE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,669
Number of Sequences: 438
Number of extensions: 531
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)