Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A20
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    22   9.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    22   9.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    22   9.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    22   9.4  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 161 GLSNNELVSWPLTTL 117
           GLS+NE V+ P+T+L
Sbjct: 131 GLSSNESVTLPVTSL 145


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 115 HRVVSGQETNSLFDSP 162
           HR VS Q+TN +  SP
Sbjct: 523 HRKVSAQDTNLMGSSP 538


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 4   SAMSQQPPHRRQKKTRNMTLDSVNRRLRNCRATISKS 114
           S  S  PP   +K + + T     + +  CRATI K+
Sbjct: 374 STSSGNPPSSMEKVSGSFTGTKPEQIIGICRATILKT 410


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 51  QHDIRQCQQTPQKLPGNDFQEPQSRQRP 134
           Q    Q QQ PQ+      Q+PQ  Q+P
Sbjct: 168 QQQQSQPQQQPQQQQHQQPQQPQPPQQP 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.121    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,783
Number of Sequences: 5004
Number of extensions: 6703
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)