Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A19
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   3.1  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      24   3.1  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    23   5.5  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    23   5.5  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    23   5.5  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    22   9.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    22   9.6  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 195 IFHMQKFLHLAYLDLYKLFNLKKI*TCATYLKLIPFVVPVSSSTIVRFTQVLRLSLYSPP 16
           I+H +      +L     FN  K+    T  KLI  V+     T+++ T +L +S Y+ P
Sbjct: 226 IYHSKNKRRSLFLWKLLFFNHWKLVALITITKLIQDVLAFVQPTLIQKT-ILFISSYTSP 284

Query: 15  S 13
           +
Sbjct: 285 N 285


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 105 LKLIPFVVPVSSSTIVRFTQVLR 37
           ++ I F+ P SSS IVR  +VLR
Sbjct: 332 VEYITFIHPSSSSPIVRKKKVLR 354


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 26  YSDKRNTWVKRTMV 67
           ++D  N W+KRT+V
Sbjct: 710 FTDINNDWIKRTLV 723


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 141 KVYKGLNKLGVKTFAYEIFV 200
           KVY+G + L +KT   EIF+
Sbjct: 156 KVYEGADFLRIKTLFEEIFM 175


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 26  YSDKRNTWVKRTMVDELTGTTKG 94
           +++ R+ W+KRT+V    G  KG
Sbjct: 694 FTNIRSGWIKRTLVAAGFGKPKG 716


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 153 LYKLFNLKKI*TCATYLKLIPFVVPVSSSTIV 58
           +Y      KI    T+  L+PFVVP+ +   V
Sbjct: 5   IYNGNGASKICLLRTFQSLLPFVVPLYAMRFV 36


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 144 LFNLKKI*TCATYLKLIPFVVPVSSSTIVRFTQVLRLSLYSPPSCRIN 1
           L++L+   T A++ + +    P+ SS I +   V   S+Y    C I+
Sbjct: 183 LYSLRVTSTDASFTEYLLSTDPIPSSCIHKIITVDYFSIYWISKCEIS 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,869
Number of Sequences: 5004
Number of extensions: 11424
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)