Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A19
         (215 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0444 - 17649685-17650524                                         25   8.3  
04_04_1422 + 33453498-33453519,33453617-33454887                       25   8.3  

>09_04_0444 - 17649685-17650524
          Length = 279

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 65  PLYALPRCYVYHYIHHLRA 9
           P Y  P  Y++H+ HH+ A
Sbjct: 135 PYYRTPAGYLHHHQHHMAA 153


>04_04_1422 + 33453498-33453519,33453617-33454887
          Length = 430

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 17  GGEYSDKRNTWVKRTMVDELTGTTKGISF 103
           GGE   K+  W  RT+ D   GT KGI +
Sbjct: 184 GGEDRGKKLEW--RTLHDIAVGTAKGIRY 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,750,063
Number of Sequences: 37544
Number of extensions: 62357
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)