Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A18
         (146 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    25   9.7  

>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 45  LITFLLTVAYSISMKLHRRRTLR 113
           ++TFL  + + +SM++H R T R
Sbjct: 202 IVTFLKIIQFYMSMRIHDRETQR 224


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 137 SIQIRSRYSQCSSPM*FHTYAV 72
           +I+I SRYS+C + M +H  +V
Sbjct: 92  AIEIISRYSKCFNTMSYHLVSV 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,331
Number of Sequences: 27780
Number of extensions: 30972
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 12,740,198
effective HSP length: 29
effective length of database: 11,934,578
effective search space used: 226756982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)