Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A16
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    24   2.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    23   4.0  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    22   9.3  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  SGSVMENWKYRFIYEYEFHRGTCATQ 104
           +G  + +W    +Y +EFHRGT  TQ
Sbjct: 541 AGQTLPSWNGE-LY-FEFHRGTYTTQ 564


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 12   EEILESGSVMENWKYRFIYEYEFHRG 89
            +E LE+G V      +FI +YE H G
Sbjct: 966  KEYLEAGLVGTEKIRKFIVDYESHHG 991


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 21  LESGSVMENWKYRFIYEYEF 80
           L+ GS +  WK RFI    F
Sbjct: 160 LQRGSQIRVWKIRFIISISF 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,043
Number of Sequences: 5004
Number of extensions: 5310
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)