Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A15
(203 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 38 1e-04
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.11
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 0.34
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 1.0
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 24 3.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 23 4.2
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 23 4.2
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 23 4.2
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 23 4.2
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 23 7.3
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo... 22 9.7
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 22 9.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 22 9.7
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 38.3 bits (85), Expect = 1e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +3
Query: 63 EFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEKHADILWNTTV 200
+ AE A EGP+ + + LA KY + I+ E++EK ++I++N+ +
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCI 104
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.7 bits (61), Expect = 0.11
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 132 MVIVSSILERDEKHADIL 185
+++VS++LE DEKH D++
Sbjct: 998 LIVVSNLLEMDEKHVDVV 1015
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 0.34
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 15 WNMPFAFCTREKQPWCEFA-ESAEEGPTTRFLRELAVKYAMVIVSSILERDEK 170
+N F +EK+ E E A G T+F+R V+YA I IL+ +K
Sbjct: 396 YNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEILDSPKK 448
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 1.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 22 CPSLSARGRNNPGANSLNLPRKDRLHAFSVSWLSNTPW*SCLLSSRGTRNTPTF 183
C +L A G A PR R +F V+W S T W + + S T++T F
Sbjct: 134 CSALPAAGSIYLWAAESAGPRFGRFVSFLVAWWSTTAWTTFVASI--TQSTANF 185
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 202 ITVVFQRMSACFSSLSRIEDTITMAYLTASSR 107
++ FQR+ SSL R ED++ Y +R
Sbjct: 71 LSKAFQRLEDSISSLQRQEDSLKTKYELQEAR 102
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 92 DYTLSP*AGCQIRHGNRVFYPREGRETRRHSLEYD 196
DY+ SP + R + R R +R H +Y+
Sbjct: 173 DYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYE 207
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 48 KQPWCEFAESAEEGPTTRFLR 110
KQ WC+ A E T +LR
Sbjct: 607 KQQWCQIEALAAENKPTDYLR 627
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 13 DGTCPSLSARGRNNPGANSLNLPR 84
+G CP + N PG SLN+PR
Sbjct: 308 EGYCPHKTG---NRPGFPSLNIPR 328
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 102 FLRELAVKYAMVIVSSILERDEKHADILWN 191
+LR+L A + I+ RD K + WN
Sbjct: 162 YLRDLLKGLAHIDAKGIIHRDIKPGNFAWN 191
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 137 YHGVFDSQLTE 105
+HG+FDSQ+ E
Sbjct: 511 WHGIFDSQILE 521
>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
Csl4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 181
Score = 22.2 bits (45), Expect = 9.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 86 RTDYTLSP*AGCQIRHGNRVFYPREGRET 172
R DY +S G N V YPR+ ET
Sbjct: 23 RGDYIISTRTGIFDPEKNSVTYPRKVEET 51
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 46 RNNPGANSLNLPRKDRLHAFSVSWLSN 126
+N+P S+++P D + V W++N
Sbjct: 283 QNDPTTLSISIPIADLSYKHVVEWVTN 309
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 63 RTRVVSPACRKRRACSI 13
RT +SPA KRR SI
Sbjct: 221 RTEALSPALGKRRMASI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,917
Number of Sequences: 5004
Number of extensions: 16434
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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