Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A15
(203 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 91 1e-19
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 0.90
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 27 1.6
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834... 26 3.6
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 26 3.6
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135... 26 4.8
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 25 6.4
06_01_0722 + 5269772-5269821,5270757-5270919 25 6.4
04_04_1582 - 34590698-34591199,34593849-34594690 25 6.4
04_01_0276 + 3658852-3660894 25 6.4
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728... 25 6.4
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 25 8.4
03_05_0404 + 23857680-23857982 25 8.4
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 90.6 bits (215), Expect = 1e-19
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = +3
Query: 15 WNMPFAFCTREKQPWCEFAESAEEGPTTRFLRELAVKYAMVIVSSILERDEKHADILWNT 194
W MPFAFCTREK+ WCEFAE + G +T+FL++LA KY MVIVS ILERD H +I+WNT
Sbjct: 150 WTMPFAFCTREKR-WCEFAEPVD-GESTQFLQQLAKKYNMVIVSPILERDVNHGEIVWNT 207
Query: 195 TVI 203
V+
Sbjct: 208 AVV 210
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.3 bits (60), Expect = 0.90
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 67 SLNLPRKDRLHAFSVSWL 120
SLN P++DRLHA W+
Sbjct: 182 SLNKPQRDRLHALGFDWV 199
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -3
Query: 189 SKECRRVSRPSRG*KTRLP--WRI*QPAHGESV*SVLPRQIQR-IRTRVVSPACRKRRAC 19
++ C+ VSRPSR +P R P+ SV S + R Q RTR +P+ R + A
Sbjct: 293 TERCKSVSRPSRAVTLPVPVLHRSSSPSKASSVTSSISRSFQSPSRTRPSTPS-RSQSAG 351
Query: 18 SI 13
SI
Sbjct: 352 SI 353
>03_05_0947 -
29081007-29081047,29081670-29081958,29083044-29083424,
29083935-29084129
Length = 301
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 46 RNNPGANSLNLPRKDRLHAFSVSWLSNTPW 135
R P S LPR+ RLHA VS + W
Sbjct: 33 RTGPAGGSCFLPRQARLHAGDVSPCAYQMW 62
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -2
Query: 118 ASSRRKRVVGPSSADSANSHQGCFSRVQKAKGMFHHRAE 2
+ R + P + S N H GC S Q + ++ H+ E
Sbjct: 352 SKGRGRGAPSPLARSSQNKHLGCASNGQSWEDVYKHKLE 390
>05_01_0188 -
1357074-1357098,1357811-1357941,1358572-1358667,
1358736-1358769,1358867-1358958,1359273-1359332,
1359376-1359435,1360016-1360525,1360645-1360719,
1360809-1361015
Length = 429
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/59 (20%), Positives = 30/59 (50%)
Frame = +1
Query: 22 CPSLSARGRNNPGANSLNLPRKDRLHAFSVSWLSNTPW*SCLLSSRGTRNTPTFFGIRR 198
CP+ N +L +P K++++ F++SW + + ++S+ T + P +++
Sbjct: 324 CPTGEGIDVGNICPYTLPMPNKEKMNLFNLSWKTGSS-----VASKATTDVPYLLAVKK 377
>10_08_0558 + 18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 4 RHDDGT---CPSLSARGRNNPGANSLNLPRKDRLHAFSVSWL 120
+HDDGT C L + R+N + R+D H SV L
Sbjct: 917 KHDDGTTGSCNVLPSTNRHNANGDCNGHDRRDAAHDQSVKEL 958
>06_01_0722 + 5269772-5269821,5270757-5270919
Length = 70
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 176 GVFLVPLEDRRHDYHGVFDSQLTEKACSRSFLGRFSEF 63
GV +P R +D+H V+ + TEK +R FL F
Sbjct: 25 GVSAIP---RFNDHHEVYRNFKTEKVSARDFLNPLKPF 59
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 86 FLGRFSEFAPGLFLPR 39
FL FSE P LFLPR
Sbjct: 78 FLSLFSEETPNLFLPR 93
>04_01_0276 + 3658852-3660894
Length = 680
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 120 VKYAMVIVSSILERDEKHADILWN 191
+KYA I +LER+E DIL++
Sbjct: 614 LKYAREIAKIVLEREEDKKDILFD 637
>03_03_0140 +
14771293-14771821,14772343-14772455,14772723-14772830,
14772931-14772973,14773454-14773593,14774216-14774446
Length = 387
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 164 VPLEDRRHDYHG 129
VPL+D+R +YHG
Sbjct: 371 VPLDDKRQEYHG 382
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 93 TTRFLRELAVKYAMVIVSSILERDEKHADI 182
TT L LAVK+ +++ E E+HA+I
Sbjct: 308 TTSMLMTLAVKFLTETPAALAELKEEHANI 337
>03_05_0404 + 23857680-23857982
Length = 100
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 7 HDDGTCPSLSARGRNNPGANSLNLPRKDRLHAFSVSWL 120
+D G P A GR G ++NL RK R S W+
Sbjct: 2 YDRGEAPR--AHGRGGHGKPNMNLRRKSRTLVGSSLWI 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,245
Number of Sequences: 37544
Number of extensions: 115734
Number of successful extensions: 361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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