Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A14
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    51   2e-08
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    32   0.009
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    32   0.009
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    24   2.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +2

Query: 8   DAKNMMAACDPRHGRYLTVATIFRGRMS 91
           DA NMM A DPRHGRYLTVA +FRG++S
Sbjct: 295 DANNMMVAADPRHGRYLTVAALFRGKVS 322



 Score = 35.5 bits (78), Expect = 0.001
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +3

Query: 93  VKEVDEQMMNIQNKNSSYFVE 155
           +KEVDEQ+ ++Q KNS+YFVE
Sbjct: 323 MKEVDEQIRSVQTKNSAYFVE 343


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  NMMAACDPRHGRYLTVATIFRG 82
           N M  CDPR GRY+    ++RG
Sbjct: 304 NQMVKCDPRTGRYMATCLLYRG 325


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  NMMAACDPRHGRYLTVATIFRG 82
           N M  CDPR GRY+    ++RG
Sbjct: 300 NQMVKCDPRAGRYMATCLLYRG 321


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 94  TGHATAEDGCDGEVAAVTRVTRRHHV 17
           TG A A+D    E A+V++V +RHHV
Sbjct: 732 TGEAPADDVVMDEDASVSQV-QRHHV 756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,342
Number of Sequences: 5004
Number of extensions: 4215
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)