Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A14
(155 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 54 2e-08
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 52 5e-08
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 52 5e-08
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 52 5e-08
03_01_0034 + 318432-318825,318902-319851 52 5e-08
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 52 5e-08
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 52 5e-08
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 52 5e-08
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 36 0.003
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 36 0.003
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 36 0.003
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 34 0.014
08_02_0787 - 21200762-21201142 28 0.89
10_08_0142 - 15169825-15170538 25 6.3
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRGRMS++
Sbjct: 311 DAKNMMCAADPRHGRYLTASAMFRGRMSTK 340
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 340 KEVDEQMINVQNKNSSYFVE 359
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 324
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 324 KEVDEQMLNVQNKNSSYFVE 343
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 475 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 504
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 504 KEVDEQMINVQNKNSSYFVE 523
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 324
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 324 KEVDEQMLNVQNKNSSYFVE 343
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 324
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 324 KEVDEQMLNVQNKNSSYFVE 343
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 324
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 324 KEVDEQMLNVQNKNSSYFVE 343
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 316 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 345
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 345 KEVDEQMINVQNKNSSYFVE 364
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMSSE 97
DAKNMM A DPRHGRYLT + +FRG+MS++
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTK 324
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +3
Query: 96 KEVDEQMMNIQNKNSSYFVE 155
KEVDEQM+N+QNKNSSYFVE
Sbjct: 324 KEVDEQMINVQNKNSSYFVE 343
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 36.3 bits (80), Expect = 0.003
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRG 82
+ +MMA CDPRHG+Y+ ++RG
Sbjct: 297 EPSSMMAKCDPRHGKYMACCLMYRG 321
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 36.3 bits (80), Expect = 0.003
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRG 82
+ +MMA CDPRHG+Y+ ++RG
Sbjct: 297 EPSSMMAKCDPRHGKYMACCLMYRG 321
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 36.3 bits (80), Expect = 0.003
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRG 82
+ +MMA CDPRHG+Y+ ++RG
Sbjct: 297 EPSSMMAKCDPRHGKYMACCLMYRG 321
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 34.3 bits (75), Expect = 0.014
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
++MA CDPRHG+Y+ ++RG
Sbjct: 381 SVMAKCDPRHGKYMACCLMYRG 402
>08_02_0787 - 21200762-21201142
Length = 126
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 88 HATAEDGCDGEVAAVTRVTRRHHV 17
H E G DGE AAVTR+ RR V
Sbjct: 99 HQVVEVGDDGEGAAVTRLRRRRMV 122
>10_08_0142 - 15169825-15170538
Length = 237
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 127 WMF--IICSSTSFTGHATAEDGCDGEVA 50
W+F +C++T+ T A A+DG G A
Sbjct: 10 WLFPCAVCATTTMTTPAAADDGEGGRAA 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,726
Number of Sequences: 37544
Number of extensions: 34876
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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