Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A14
(155 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 61 1e-10
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 61 1e-10
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 61 1e-10
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 61 1e-10
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 60 2e-10
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 60 2e-10
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 38 0.001
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 38 0.001
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 38 0.001
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 38 0.001
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 38 0.001
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 37 0.002
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 37 0.002
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 37 0.002
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 37 0.002
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 34 0.016
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 34 0.016
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 31 0.11
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 31 0.11
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 30 0.19
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 30 0.26
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 29 0.45
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 27 1.4
AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical ... 27 1.4
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 27 1.4
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 60.9 bits (141), Expect = 1e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMS 91
DAKNMMAACDPRHGRYLTVA +FRGRMS
Sbjct: 295 DAKNMMAACDPRHGRYLTVAAMFRGRMS 322
Score = 40.7 bits (91), Expect = 1e-04
Identities = 16/21 (76%), Positives = 21/21 (100%)
Frame = +3
Query: 93 VKEVDEQMMNIQNKNSSYFVE 155
++EVDEQM+++QNKNSSYFVE
Sbjct: 323 MREVDEQMLSVQNKNSSYFVE 343
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 60.9 bits (141), Expect = 1e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMS 91
DAKNMMAACDPRHGRYLTVA +FRGRMS
Sbjct: 295 DAKNMMAACDPRHGRYLTVAAMFRGRMS 322
Score = 42.7 bits (96), Expect = 3e-05
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +3
Query: 93 VKEVDEQMMNIQNKNSSYFVE 155
++EVD+QMMN+QNKNSSYFVE
Sbjct: 323 MREVDDQMMNVQNKNSSYFVE 343
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 60.9 bits (141), Expect = 1e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMS 91
DAKNMMAACDPRHGRYLTVA +FRGRMS
Sbjct: 295 DAKNMMAACDPRHGRYLTVAAMFRGRMS 322
Score = 44.0 bits (99), Expect = 1e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +3
Query: 93 VKEVDEQMMNIQNKNSSYFVE 155
+KEVDEQM+N+QNKNSSYFVE
Sbjct: 323 MKEVDEQMLNVQNKNSSYFVE 343
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 60.9 bits (141), Expect = 1e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMS 91
DAKNMMAACDPRHGRYLTVA +FRGRMS
Sbjct: 295 DAKNMMAACDPRHGRYLTVAAMFRGRMS 322
Score = 42.7 bits (96), Expect = 3e-05
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +3
Query: 93 VKEVDEQMMNIQNKNSSYFVE 155
++EVDEQM+N+QNKNSSYFVE
Sbjct: 323 MREVDEQMLNVQNKNSSYFVE 343
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMS 91
DAKNMMAACDPRHGRYLT A IFRGRMS
Sbjct: 295 DAKNMMAACDPRHGRYLTAAAIFRGRMS 322
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +3
Query: 93 VKEVDEQMMNIQNKNSSYFVE 155
+KEVDEQM+NIQNKNSSYFV+
Sbjct: 323 MKEVDEQMLNIQNKNSSYFVD 343
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRGRMS 91
DAKNMMAACDPRHGRYLT A IFRGRMS
Sbjct: 295 DAKNMMAACDPRHGRYLTAAAIFRGRMS 322
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +3
Query: 93 VKEVDEQMMNIQNKNSSYFVE 155
+KEVDEQM+NIQNKNSSYFV+
Sbjct: 323 MKEVDEQMLNIQNKNSSYFVD 343
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 37.9 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 8 DAKNMMAACDPRHGRYLTVATIFRG 82
+A N M CDP+HG+Y+ V ++RG
Sbjct: 292 EASNQMVKCDPKHGKYMAVCLLYRG 316
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V +FRG
Sbjct: 300 NQMVKCDPRHGKYMAVCLLFRG 321
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V +FRG
Sbjct: 299 NQMVKCDPRHGKYMAVCLLFRG 320
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V +FRG
Sbjct: 300 NQMVKCDPRHGKYMAVCLLFRG 321
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V +FRG
Sbjct: 300 NQMVKCDPRHGKYMAVCLLFRG 321
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 36.7 bits (81), Expect = 0.002
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V ++RG
Sbjct: 298 NQMVKCDPRHGKYMAVCLLYRG 319
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 36.7 bits (81), Expect = 0.002
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V ++RG
Sbjct: 298 NQMVKCDPRHGKYMAVCLLYRG 319
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 36.7 bits (81), Expect = 0.002
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V ++RG
Sbjct: 298 NQMVKCDPRHGKYMAVCLLYRG 319
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 36.7 bits (81), Expect = 0.002
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPRHG+Y+ V ++RG
Sbjct: 298 NQMVKCDPRHGKYMAVCLLYRG 319
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 33.9 bits (74), Expect = 0.016
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPR+G+Y+ V ++RG
Sbjct: 298 NQMVKCDPRNGKYMAVCLLYRG 319
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 33.9 bits (74), Expect = 0.016
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDPR+G+Y+ V ++RG
Sbjct: 298 NQMVKCDPRNGKYMAVCLLYRG 319
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 31.1 bits (67), Expect = 0.11
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 23 MAACDPRHGRYLTVATIFRG 82
M CDPR G+Y+ V ++RG
Sbjct: 308 MVKCDPRRGKYMAVCLLYRG 327
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 31.1 bits (67), Expect = 0.11
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 23 MAACDPRHGRYLTVATIFRG 82
M CDPR G+Y+ V ++RG
Sbjct: 280 MVKCDPRRGKYMAVCLLYRG 299
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 30.3 bits (65), Expect = 0.19
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
N M CDP G+Y+ V ++RG
Sbjct: 303 NQMVKCDPSAGKYMAVCLLYRG 324
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 29.9 bits (64), Expect = 0.26
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 17 NMMAACDPRHGRYLTVATIFRG 82
+ M CDPR+G+Y+ ++RG
Sbjct: 300 SQMVKCDPRNGKYMACCLLYRG 321
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 29.1 bits (62), Expect = 0.45
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 23 MAACDPRHGRYLTVATIFRG 82
M CDPR G+Y+ ++RG
Sbjct: 307 MVKCDPRRGKYMACCLLYRG 326
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 62 VATIFRGRMSSEGS*RADDEHPEQEL 139
+A++FRGR + E DDE PE ++
Sbjct: 4 IASVFRGRNTHERGNSHDDEDPEAQI 29
>AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical
protein T04C4.1b protein.
Length = 893
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 77 RGRMSSEGS*RADDEHP 127
R RMSS S +ADDEHP
Sbjct: 327 RSRMSSMSSTQADDEHP 343
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 77 RGRMSSEGS*RADDEHP 127
R RMSS S +ADDEHP
Sbjct: 388 RSRMSSMSSTQADDEHP 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,555
Number of Sequences: 27780
Number of extensions: 26869
Number of successful extensions: 91
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -