Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A13
         (117 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    26   3.2  

>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 13  YNTYCDSP*DVSYYLWLLMFNFV 81
           YNTY D+    +Y++++ MF+F+
Sbjct: 430 YNTYFDNSSIRAYFIFITMFSFI 452



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  YNTYCDSP*DVSYYLWLLMFNFVA 84
           YNTY D P    Y+L + + +F+A
Sbjct: 118 YNTYFDKPLIKLYFLIISLVSFIA 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,350
Number of Sequences: 27780
Number of extensions: 20352
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 232035182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)