Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A12
(184 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 34 0.002
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 32 0.012
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 2.3
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 24 2.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 23 5.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 23 7.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 23 7.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 23 7.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.3
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po... 22 9.3
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 22 9.3
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 22 9.3
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 95 MSVDNEELVQRAKLAEQAERYDDMAAAMKE 184
MS E V AKLAEQAERY++M MK+
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKK 30
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 31.9 bits (69), Expect = 0.012
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 98 SVDNEELVQRAKLAEQAERYDDMAAAMK 181
+ E+ V AKLAEQAERY+ M MK
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMK 30
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 2.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 44 YPSNNGIQ*NQYLPSSTMSVDNEELVQRAKLAEQAERYDDMAAAMKE 184
YPSN +Q S+MS+ + +QR L Q +YD M++
Sbjct: 462 YPSNLSMQ-------SSMSIKDPSQLQRIHLYPQHSQYDPNGMTMRD 501
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 140 QPTWRVVLVPHYRRTSWTMEDIDFTV 63
+PTW+V LVP+ + SW I T+
Sbjct: 28 EPTWKVDLVPY--KQSWVPISIVTTI 51
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 35 LPFYPSNNGIQ*NQYLPSSTMS 100
LPFYP ++GI + +P S S
Sbjct: 295 LPFYPFDSGIPVSPNIPVSPSS 316
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 22.6 bits (46), Expect = 7.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 183 SFIAAAMSSYRSACS-ANLARCTSSSLSTDIVDDGRY*FHCMPLL 52
SF +S + S +NL TSS+ S I D R+ F P+L
Sbjct: 2 SFFKKKLSKGKEILSKSNLKTHTSSNASLSIDDLNRFGFSLNPVL 46
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 171 AAMSSYRSACSANLARCTSSSLSTDIVDDGRY 76
A + + S + + C + +L+TD + GRY
Sbjct: 530 AIIDGFPSIVAGEIVFCDADNLNTDGIYPGRY 561
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 22.6 bits (46), Expect = 7.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 167 PCHHIVQPA 141
PCHHI PA
Sbjct: 516 PCHHIFHPA 524
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 22.2 bits (45), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 183 SFIAAAMSSYRSACSANLARCTSSSLST 100
SFI + +SS S++ A TSSS +T
Sbjct: 78 SFITSLVSSSSQQSSSSSASLTSSSSAT 105
>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 439
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 33 NYRFTLPTMAYSEINIFHRPR 95
N+ T PT + E++ +H P+
Sbjct: 104 NFELTEPTFDFPELDSWHDPK 124
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 54 TMAYSEINIFHRPRCPSIMRN*YNAPSW 137
T Y E N+F CP ++N P W
Sbjct: 748 TQRYPEANLFAATYCPDEVKN--VLPEW 773
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = -3
Query: 137 PTWRVVLVPH-YRRTSWTMEDIDFTVCHC 54
PTW + + W M + FT HC
Sbjct: 265 PTWDMAYEKFGFMLIFWNMAGVPFTYSHC 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,134
Number of Sequences: 5004
Number of extensions: 11887
Number of successful extensions: 41
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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