Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A12
(184 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 38 0.001
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 34 0.014
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 34 0.019
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 33 0.024
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 33 0.032
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 33 0.043
11_05_0039 + 18531669-18531993,18534352-18534411,18534417-18534661 27 2.8
02_05_1296 - 35535303-35535551 25 6.5
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 25 8.6
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 25 8.6
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 104 DNEELVQRAKLAEQAERYDDMAAAMK 181
+ E++V+ AKLAEQAERYDDM MK
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMK 28
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 110 EELVQRAKLAEQAERYDDMAAAMKE 184
EE+V AKLAEQAERY++M M++
Sbjct: 11 EEMVYMAKLAEQAERYEEMVEFMEK 35
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 86 SSTMSVDNEELVQRAKLAEQAERYDDMAAAMKE 184
S+ + EE V AKLAEQAERY++M M++
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEK 34
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 86 SSTMSVDNEELVQRAKLAEQAERYDDMAAAMKE 184
S + EE V AKLAEQAERY++M M++
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEK 252
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 33.1 bits (72), Expect = 0.032
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 STMSVDNEELVQRAKLAEQAERYDDMAAAMKE 184
S EE V AKLAEQAERY++M M++
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEK 33
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 32.7 bits (71), Expect = 0.043
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 101 VDNEELVQRAKLAEQAERYDDMAAAMKE 184
+ EE V AKLAEQAERY++M M++
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEK 28
>11_05_0039 + 18531669-18531993,18534352-18534411,18534417-18534661
Length = 209
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 167 PCHHIVQPAQPTWRVVLVPHYRRT-SWTMEDIDFTVCHCWKGKTVIN*Q 24
P HH+ P W + + +RR+ W ED D H G ++IN Q
Sbjct: 2 PTHHLTAIQAPKWVIKRIYRFRRSFLWKGEDPD----HSNPGDSLINWQ 46
>02_05_1296 - 35535303-35535551
Length = 82
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 162 SSYRSACSANLARCTSSSLSTDIVDD 85
+S SA A+L RC+ +LSTD DD
Sbjct: 10 ASVTSAFFASLERCSCINLSTDDDDD 35
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 126 APSWLSRLNDMMTWRPR 176
AP W +RL+ WRPR
Sbjct: 2 APRWENRLDAKAPWRPR 18
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 177 IAAAMSSYRSACSANLARCTSSSLSTDIVD 88
+A A+ + S+C+ N CTSS L ++D
Sbjct: 172 MARALLATLSSCTRNRTMCTSSGLLAILLD 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,134,648
Number of Sequences: 37544
Number of extensions: 80232
Number of successful extensions: 245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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