Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A11
(281 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 39 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 3e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 5e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 6e-04
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.002
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.008
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 33 0.008
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.010
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.014
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.014
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.024
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.041
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.13
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 29 0.17
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 0.51
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 0.67
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 0.89
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 1.2
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 1.6
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 1.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 2.1
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 2.1
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 25 2.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 2.7
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 2.7
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 24 3.6
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 24 3.6
SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz... 24 4.7
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 4.7
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 23 6.3
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 23 6.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 23 8.3
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 23 8.3
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 23 8.3
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 23 8.3
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.7 bits (86), Expect = 2e-04
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 28 DLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 192
D+EREF +YG + + V N G+AF+ FE ++ + A A G+ + G + V+
Sbjct: 115 DIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVD 174
Query: 193 ISRKR 207
+ R R
Sbjct: 175 VERGR 179
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.9 bits (84), Expect = 3e-04
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +1
Query: 58 KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 192
K N + +P FAFI FEN A++A +++NG G TLKVE
Sbjct: 55 KKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
Score = 33.9 bits (74), Expect = 0.004
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 189
+ LE F K+G++ S +A P G+ F+ F + EA A + +NG+ L V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 190 EISRKRD 210
+ KR+
Sbjct: 495 NYAEKRE 501
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 5e-04
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 25 EDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 201
+D++ E D KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 531 QDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILP 590
Query: 202 KRD 210
+ D
Sbjct: 591 ETD 593
Score = 32.3 bits (70), Expect = 0.014
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 189
ED++ F+ +G + V + + GF +I++ N A +A MNG ++ G ++V
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 6e-04
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGIEMLGATLKVE 192
+ LE F K+GK+ + + G FAF+ ++ + AE+A +++NG E+ G + V+
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Query: 193 ISRKRD 210
+ +D
Sbjct: 182 WAVSKD 187
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.1 bits (77), Expect = 0.002
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 31 LEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 204
LE F YGK+ V L G AF+ F+NL+ A A + G + G + ++ S+
Sbjct: 46 LEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
Query: 205 R 207
+
Sbjct: 106 K 106
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 33.1 bits (72), Expect = 0.008
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 16 ARGEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 195
A ED+ F YG++ + +N GF F+E E+ ++A D + G E +G+ + VE
Sbjct: 15 ATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEP 71
Query: 196 SR 201
+R
Sbjct: 72 AR 73
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 33.1 bits (72), Expect = 0.008
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Frame = +1
Query: 19 RGEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNG--IEMLGAT 180
R +L EF+ +G L + + FAF+E+E+ ++AEDA ++G +E G
Sbjct: 19 RARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGV 78
Query: 181 LKVEISRK 204
L+VE +++
Sbjct: 79 LRVEWAKQ 86
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.7 bits (71), Expect = 0.010
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 189
E++ F +YG + + + + G AF+ +EN+Q+A AC ++G + L V
Sbjct: 26 EEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.014
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 CCMNSA-RGEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGI 162
C +N + EDLE F ++GK+ S V + +AFIEF+N + E A M +
Sbjct: 249 CKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNV 308
Query: 163 EMLGATLKVEISR 201
+ + + V+ S+
Sbjct: 309 LIDDSRIHVDFSQ 321
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.3 bits (70), Expect = 0.014
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 16 ARGEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGIEMLGATL 183
A +D++ YG+L SV V + GFAF EF +EA +A A+ +LG L
Sbjct: 732 ATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHL 791
Query: 184 KVE 192
++
Sbjct: 792 VLQ 794
Score = 31.9 bits (69), Expect = 0.018
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 204
GF F+EF++ A A AMNG + G L++++S +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
Score = 30.7 bits (66), Expect = 0.041
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 13 SARGEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSAMNGIEMLGA 177
S +DL+ F +G+L V + + NP GFA+I+F + +A A ++ G
Sbjct: 333 SCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGR 392
Query: 178 TLKVEISRKR 207
L V ++ R
Sbjct: 393 LLHVLPAKAR 402
Score = 24.2 bits (50), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 97 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 210
FAFI F+N ++A+ A +N + T ++E+ R D
Sbjct: 48 FAFIGFKNEEDADKAIRYLN--KSYVETSRIEVHRALD 83
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.5 bits (68), Expect = 0.024
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 189
GF F EF + Q+ E AC +N +++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
Score = 29.5 bits (63), Expect = 0.095
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 213
G+ F+ +++ + A+ A AMN ++ + V + KR+G
Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREG 180
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.041
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 159
E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 177 ERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.1 bits (62), Expect = 0.13
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 198
GF F EF+N +AE A S ++G + G L + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 0.17
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 25 EDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 195
+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 274 DDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 0.51
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 82 LNPPGFAFIEFENLQEAEDACSAMNG 159
L P G AF+ F N ++ + A +NG
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNG 111
Score = 27.1 bits (57), Expect = 0.51
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 192
GF F+ F N ++ A MNG ++ TL V+
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 0.67
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 13 SARGEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGIEMLGA 177
S E+L+ F G +N V + + P GFA+IEF +A +NG +
Sbjct: 65 SVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGSMLHER 123
Query: 178 TLKVEISR 201
LKV R
Sbjct: 124 PLKVTPKR 131
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 0.89
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 77 THTEFNFPYLSNSRSRSSPRAEFMQ 3
T FPYL NSR+RS +E+ Q
Sbjct: 329 TEYRIAFPYLYNSRARSVALSEYHQ 353
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 173 PNISMPFMALHASSASCKFSNSMN-AKPG 90
P + PF A+HA+++S + N+ N PG
Sbjct: 384 PKTARPFAAIHANASSTQLRNTENITHPG 412
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 1.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -1
Query: 176 APNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFNFPYLSN--SRSRSSP 21
+PNI+ HA S+ N +NA+ N P+ SN S SR P
Sbjct: 269 SPNITSSAGMTHAQPTHNPTSSYGNGASTNYNASRPPSNHPHSSNYPSSSRRKP 322
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 1.6
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 204
G+A++ F N+++ E A +N + G ++ S++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 2.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 94 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 189
GF ++FEN +A + +NG G L++
Sbjct: 321 GFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 97 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 195
+AFIEFE+L A M+ + G L+ ++
Sbjct: 148 YAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 13 SARGEDLEREFDKYGKLNSVWVAL 84
S+ E++E EF+ YGK + V VAL
Sbjct: 432 SSNKEEVEIEFELYGKNDDVNVAL 455
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.6 bits (51), Expect = 2.7
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 119 FSNSM-NAKPGGFNATHTEFNFPYLSNSRSRSS 24
FSNS N P FN T P + S+ RS+
Sbjct: 398 FSNSTGNTNPSAFNGLLTSSRIPSYNGSKVRST 430
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 24.6 bits (51), Expect = 2.7
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 16 ARGEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGIEMLGAT 180
A E +E F +G + ++ + L+ G+A IE+ L++A+ A N + +L
Sbjct: 21 ATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKN-LSLLDEK 79
Query: 181 LKVEIS 198
L+V+ +
Sbjct: 80 LEVDFA 85
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 3.6
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = -1
Query: 158 PFMALHASSASCKFSNSMNAKPGGFNATHTEFNFPYLSNS 39
P +A+ ++ K N+ N P G + HT ++ ++ +
Sbjct: 726 PTLAVSGIDSTVKIFNTENTPPSGCSRNHTSNSYKIIATN 765
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 3.6
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMN 156
ED+ EF KYG++ + V N G ++ F+ + A++A +N
Sbjct: 78 EDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125
>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
Img2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 23.8 bits (49), Expect = 4.7
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = -2
Query: 67 SLIFHIYQTPARDLPL 20
SL FH+ +TP+++LP+
Sbjct: 22 SLRFHVSRTPSKNLPV 37
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 23.8 bits (49), Expect = 4.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 97 FAFIEFENLQEAEDACSAMN 156
+AF+EF+ ++A++A MN
Sbjct: 48 YAFVEFDEPEDAKEAMENMN 67
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 23.4 bits (48), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 167 ISMPFMALHASSASCKFSNSMNAKPGG 87
+++P MAL C+F S KPGG
Sbjct: 487 LAIPEMALPPCHIFCQFYVSEPCKPGG 513
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 23.4 bits (48), Expect = 6.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 80 ATHTEFNFPYLSNSRSRSSPRAEF 9
A EF+FP +S+S S P+ F
Sbjct: 13 AKPAEFDFPLGKDSQSSSKPKKRF 36
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 103 FIEFENLQEAEDACSAMNGIEMLGATLK 186
F+EFEN+ A +A + G+ L +++K
Sbjct: 467 FVEFENIPYAMEALKNLQGV-CLSSSIK 493
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 23.0 bits (47), Expect = 8.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 170 NISMPFMALHASSASCKFSNSMNAKPGGFNATHT 69
NI+ P + + S SNS A P NATHT
Sbjct: 333 NITKPTL-IQNPSTPLSVSNSKVASPETPNATHT 365
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 23.0 bits (47), Expect = 8.3
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 25 EDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 189
E+ F+++G++ + ++ P GF F+ +EN + A +A + I + G ++V
Sbjct: 261 EEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEV 319
Query: 190 E 192
+
Sbjct: 320 K 320
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 89 GFNATHTEFNFPYLSNSRSRSSPRAEFMQ 3
G+N ++E P+L N S P +F Q
Sbjct: 48 GYNFKNSESIQPFLENVTSNHCPSIQFAQ 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 994,355
Number of Sequences: 5004
Number of extensions: 17087
Number of successful extensions: 85
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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