Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A10
(179 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 29 0.11
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 1.8
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 24 2.3
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 24 3.1
SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas... 24 3.1
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 3.1
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 23 4.0
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 23 5.3
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 5.3
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 23 7.1
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 23 7.1
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 23 7.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 22 9.3
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 22 9.3
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 28.7 bits (61), Expect = 0.11
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 12 WIPRGVNXDSARVRTQ*YIQYSEEHLKKCHEFTIKLCKYALNNLEDFVWDNYANHI 179
W G++ S+ RT+ ++ L KC F +K C + N DF + Y I
Sbjct: 355 WTNNGLSAVSSAYRTR-LLEPCLPELDKCVWFLLKNCDEFIENFSDFADEEYVFEI 409
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = +3
Query: 81 EHLKKCHEFTIKLCKYALNNLEDFVWDNYANH 176
++++K +FT+ Y+ ++++ F D +NH
Sbjct: 357 DYMEKYRDFTVDPVSYSKSDMQTFFSDLVSNH 388
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.2 bits (50), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 24 GVNXDSARVRTQ*YIQYSEEHLKKCHEFTIKLCKYALNNLEDFVWDN 164
G N + R Q QYSE+ L K E T+ L N+E+ V DN
Sbjct: 818 GENIELQRYLQQ-LTQYSEKFLNKESENTVGLLNAPGENIEELV-DN 862
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 105 IHGISLNVPHYTVCITVFALVPNL 34
++GI VP + VC AL P+L
Sbjct: 247 VYGIRNGVPVHDVCAVALALWPSL 270
>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 96
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 157 QTKSSRLFKAYLHSFIVNSWHFFKCSSL 74
Q ++LFK++ + +W F C +L
Sbjct: 21 QQGDTKLFKSFRFKNFIEAWGFMSCVAL 48
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 139 LFKAYLHSFIVNSWHFFKCSSLYCMYYC 56
L+K Y F ++S F + Y +Y+C
Sbjct: 30 LYKTYTSYFFMSSKSFVRGVKRYLIYFC 57
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 24 GVNXDSARVRTQ*YIQYSEEHLKKCHEFTIKLCK 125
GV+ A + Y SE+ L +C E K+CK
Sbjct: 855 GVHSGDATIALPPY-SLSEDILSRCKEIAEKVCK 887
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 69 QYSEEHLKKCH 101
QYSEEH CH
Sbjct: 38 QYSEEHCAYCH 48
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 87 LKKCHEFTIKLCKYALNNLEDF 152
LKKCH +L K L + DF
Sbjct: 177 LKKCHNQAQRLIKLLLADFPDF 198
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 72 YSEEHLKKCHEFTIKLCKYA 131
Y LKK E+ KLC++A
Sbjct: 238 YEVSELKKFWEYADKLCQFA 257
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -1
Query: 107 EFMAFL*MFLTILYVLLCSHSCRIXIHATG 18
+FM+ + MF T+ + C+ C++ + G
Sbjct: 114 KFMSLVRMFTTLAVLAQCNLLCKLALTVLG 143
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 52 EHSNTYSIVRNI 87
EHSN YS++ NI
Sbjct: 587 EHSNVYSLLSNI 598
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 133 KAYLHSFIVNSWHFF-KCSSLYCMYYCVRTRAES 35
K + S I +++ F + + L C++YC+ E+
Sbjct: 621 KVMIASLIKSAYPMFSRTNQLICLFYCLTGNEEA 654
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +3
Query: 66 IQYSEEHLKKCHEFTIKLCKYALNNLEDF 152
+ YS + ++C T + C +N +DF
Sbjct: 356 VPYSRQFTQRCPGCTSESCAERINFFQDF 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,352
Number of Sequences: 5004
Number of extensions: 11128
Number of successful extensions: 38
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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