Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A10
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0197 - 15522167-15523524,15525416-15525683                       29   0.70 
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    27   2.1  
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    26   4.9  
06_03_0525 - 21742288-21742605,21743348-21743542,21743553-217437...    25   8.6  

>09_04_0197 - 15522167-15523524,15525416-15525683
          Length = 541

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 74 ILYVLLCSHSCRIXIHATGDP 12
          IL ++L +HSC + ++AT DP
Sbjct: 9  ILLLMLFAHSCAVALNATNDP 29


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = -2

Query: 163 LSQTKSSRLFKAYLH-SFIVNSWHFFKCSSLYCMYYCVRTRAESXFTP 23
           LS   SS +    +H   +  +WH     S++ +YY  RT       P
Sbjct: 229 LSNVPSSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIP 276


>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 112 IVNSWHFFKCSSLYCMYYCVRTRAESXFTPRGIH 11
           +  +WH     +++ +YY  RT       PR ++
Sbjct: 290 LATAWHAVNTGTMFTVYYKPRTSPSEFVVPRDLY 323


>06_03_0525 -
           21742288-21742605,21743348-21743542,21743553-21743789,
           21745178-21745432,21745516-21745656,21745811-21745972,
           21746084-21746244,21747921-21748080
          Length = 542

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 177 YGWHNCPKQSLLG-YLKRIY 121
           + WH  PK+ LLG +L+R+Y
Sbjct: 357 HSWHYQPKRFLLGVFLERLY 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,705,499
Number of Sequences: 37544
Number of extensions: 64288
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)