Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A09
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1048 - 22553676-22554866                                         28   1.2  
03_06_0106 - 31682200-31682775                                         27   2.7  
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709           25   6.2  
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120...    25   6.2  
03_05_0375 + 23594977-23595045,23595471-23595926                       25   6.2  

>10_08_1048 - 22553676-22554866
          Length = 396

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 116 HPFLRRTCLYMSRTAQAWRRNKLGTDPF 33
           HP  RR C   S  + +   N L TDPF
Sbjct: 147 HPLPRRRCFSSSSISSSHNLNNLPTDPF 174


>03_06_0106 - 31682200-31682775
          Length = 191

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 143 GHRRNWPRRHPFLRRTCLYMSRTAQAWRRNKLGTDP--FRLGLEGGCA 6
           GHR +  R  P   R     +   ++ RR++LG  P   + G  GGCA
Sbjct: 50  GHRLHCLRPRPLPSRIVPTEAMEGRSKRRHRLGKPPPDLQAGAVGGCA 97


>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
          Length = 191

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 33  ERIGTQLIPPPCLRRAT 83
           +R+GT+L+PP  L+RA+
Sbjct: 66  KRVGTRLLPPDPLKRAS 82


>06_01_0160 -
           1205454-1205482,1205647-1205732,1205903-1205956,
           1206035-1206130,1207332-1207448,1207834-1207952
          Length = 166

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = -3

Query: 161 PHRHSWGHRRNWPRRHPFLRRT-CL 90
           PH H W  R  WP     LRR  CL
Sbjct: 74  PHLHRWYSRLRWPLLAGRLRRVGCL 98


>03_05_0375 + 23594977-23595045,23595471-23595926
          Length = 174

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -3

Query: 161 PHRHSWGHRR-NWPRRHPFLRRTCLYMSRTAQAWRRN 54
           P  HSW     NWPR  PF R + +     A  W  N
Sbjct: 11  PSSHSWHVGFWNWPRCRPFHRSSVVDGCGVAGPWDDN 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,222,252
Number of Sequences: 37544
Number of extensions: 62751
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)