Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A09
         (166 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY145132-1|AAN61516.1| 2517|Homo sapiens p53-associated parkin-l...    30   1.6  
AL133375-1|CAI20204.1| 2518|Homo sapiens RP3-330M21.2 protein.         30   1.6  
AJ318215-1|CAC85756.1| 2517|Homo sapiens putative E3 ubiquitin l...    30   1.6  
AB014608-1|BAA31683.3| 1753|Homo sapiens KIAA0708 protein.             30   1.6  
AB011088-1|BAA25442.3| 1382|Homo sapiens KIAA0516 protein protein.     29   2.7  

>AY145132-1|AAN61516.1| 2517|Homo sapiens p53-associated parkin-like
            cytoplasmic protein protein.
          Length = 2517

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 128  WPR-RHPFLRRTCLYMSRTAQAWRRN 54
            WP  R    RRTCL+ +  AQAW R+
Sbjct: 1303 WPLFREQLCRRTCLFYTIRAQAWSRD 1328


>AL133375-1|CAI20204.1| 2518|Homo sapiens RP3-330M21.2 protein.
          Length = 2518

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 128  WPR-RHPFLRRTCLYMSRTAQAWRRN 54
            WP  R    RRTCL+ +  AQAW R+
Sbjct: 1303 WPLFREQLCRRTCLFYTIRAQAWSRD 1328


>AJ318215-1|CAC85756.1| 2517|Homo sapiens putative E3 ubiquitin ligase
            protein.
          Length = 2517

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 128  WPR-RHPFLRRTCLYMSRTAQAWRRN 54
            WP  R    RRTCL+ +  AQAW R+
Sbjct: 1303 WPLFREQLCRRTCLFYTIRAQAWSRD 1328


>AB014608-1|BAA31683.3| 1753|Homo sapiens KIAA0708 protein.
          Length = 1753

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 128 WPR-RHPFLRRTCLYMSRTAQAWRRN 54
           WP  R    RRTCL+ +  AQAW R+
Sbjct: 539 WPLFREQLCRRTCLFYTIRAQAWSRD 564


>AB011088-1|BAA25442.3| 1382|Homo sapiens KIAA0516 protein protein.
          Length = 1382

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +3

Query: 3   ARAPALEP*PERIGT---QLIPPPCLRR 77
           ARAPAL P P R+G+     +PP C RR
Sbjct: 24  ARAPALVPVPARVGSVPCGQVPPLCRRR 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,202
Number of Sequences: 237096
Number of extensions: 306104
Number of successful extensions: 1049
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 76,859,062
effective HSP length: 34
effective length of database: 68,797,798
effective search space used: 1375955960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)