Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A07
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 95 1e-21
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 95 1e-21
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 27 0.32
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 1.3
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 1.3
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 24 3.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 3.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 24 4.0
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 23 5.3
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 23 9.2
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 95.1 bits (226), Expect = 1e-21
Identities = 43/73 (58%), Positives = 57/73 (78%)
Frame = +3
Query: 45 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKFSGV 224
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G KF+GV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 225 DIRVTGKGGGHVA 263
DIRV GGGHV+
Sbjct: 61 DIRVRVSGGGHVS 73
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 95.1 bits (226), Expect = 1e-21
Identities = 43/73 (58%), Positives = 57/73 (78%)
Frame = +3
Query: 45 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKFSGV 224
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G KF+GV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 225 DIRVTGKGGGHVA 263
DIRV GGGHV+
Sbjct: 61 DIRVRVSGGGHVS 73
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 27.5 bits (58), Expect = 0.32
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 66 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKFSGVDIRVTGK 245
G++K++ A G G VNG P D+ R++ K L + + ++ T
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 246 GGG 254
GGG
Sbjct: 71 GGG 73
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 219 QRTYKCLAKG*VPVVCTEEVWVL 151
Q T K ++ VP+VC WVL
Sbjct: 213 QETLKKISSAQVPIVCVSPKWVL 235
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 130 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 38
+T+N PCPR ++ T P T +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 3.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 250 PPFPVTLISTPENL 209
PP PV++ +TPEN+
Sbjct: 305 PPTPVSISNTPENI 318
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 3.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 130 FTRNTPCPRLQYATAVAVFLRPKTCTAWIGSRLASCTAASSE 5
F+R+ C ++ A +V RPK TA I + C S +
Sbjct: 748 FSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFCRNYSED 789
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 23.8 bits (49), Expect = 4.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 171 YKLQEPILLLGIYKFSGVDIRVTGKGGGH 257
YKL E IY+ VD G GGGH
Sbjct: 907 YKLSEKENPKLIYELYAVDNHYGGLGGGH 935
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 23.4 bits (48), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 255 VHHLFQSL*YPHQRTYKCLAKG*VPVVCTEEVWVLPGRGGVHL 127
+ H+F+SL P + Y+C V T +WVL + V L
Sbjct: 1329 MQHMFESLLVPMRLKYRCPKASRVN-QSTLPIWVLASKCFVRL 1370
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 65 ENLYGLDWFTSCLLHGSLVRI 3
ENL GLD T+ L G+ +R+
Sbjct: 142 ENLEGLDRLTNLELGGNKIRV 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,575
Number of Sequences: 5004
Number of extensions: 24203
Number of successful extensions: 69
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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