Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A07
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 87 2e-18
11_01_0155 - 1287003-1287452 87 2e-18
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 0.39
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 0.89
04_04_1233 + 31966790-31967095,31967212-31967289,31967335-319673... 27 2.7
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 27 2.7
03_06_0097 - 31632238-31632525,31633386-31633769 27 2.7
03_02_0504 - 8976973-8979414 27 2.7
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 26 3.6
08_01_0379 + 3371125-3371988 26 4.8
01_01_0333 - 2692529-2692634,2693246-2693323,2693908-2693972 26 4.8
09_06_0341 + 22406709-22407860 25 6.3
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 25 6.3
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 25 6.3
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 25 8.3
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 25 8.3
01_06_0698 - 31311529-31312055,31312160-31312346 25 8.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 86.6 bits (205), Expect = 2e-18
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = +3
Query: 36 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKF 215
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 216 SGVDIRVTGKGGG 254
+D+R+ +GGG
Sbjct: 67 KDIDMRIRVRGGG 79
>11_01_0155 - 1287003-1287452
Length = 149
Score = 86.6 bits (205), Expect = 2e-18
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = +3
Query: 36 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKF 215
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 216 SGVDIRVTGKGGG 254
+D+R+ +GGG
Sbjct: 67 KDIDMRIRVRGGG 79
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 83 NCGSILQTRTWSVACKWTPPRPGRTQTSS 169
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 129 NGRPLDLVEPRLLQYKLQEPILLLGI 206
NG PLD V+P+L ++ +E I ++ +
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVIRV 832
>04_04_1233 +
31966790-31967095,31967212-31967289,31967335-31967355,
31967390-31967557
Length = 190
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 146 VEGASIYTQHSMSSFAVCYRSCSFLTAE 63
+ G+S ++ SSFA Y SF+T+E
Sbjct: 51 ISGSSSFSSGFSSSFATSYDDASFITSE 78
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 83 NCGSILQTRTWSVACKWTPPRPGRTQTSS 169
+C S+++ + S+ W PP G+T+T S
Sbjct: 301 DCVSVMENQLSSLKLIWGPPGTGKTKTIS 329
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 48 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGIYKFS 218
Q + GR+KTA A + G G + +N R P ++Y + P++ LG
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFENSY 154
Query: 219 GVDIRVTGKG 248
V ++V G G
Sbjct: 155 DVFVKVHGGG 164
>03_02_0504 - 8976973-8979414
Length = 813
Score = 26.6 bits (56), Expect = 2.7
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Frame = +3
Query: 12 EAAVQEARREPIQAVQVFGRKKTA----TAVAYCKR-GHGVLRVN----------GRP-- 140
EA Q A EPI F R K+A T+ C++ +LR+ G P
Sbjct: 515 EAWFQNAAWEPIPVEHAFARIKSALPPPTSTTTCQQVEEALLRIELAAAATDPPVGEPFP 574
Query: 141 -LDLVEPRLLQYKL-QEPILLLGIYKFSGVDIRVTGKGGG 254
+D PR+ L Q P+L + GV++ +TG GG
Sbjct: 575 QIDSPPPRVTSPALAQGPVLSSPVATGGGVNLEMTGDAGG 614
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 77 NCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTT 181
NC CGS Q CK++ P T T T
Sbjct: 7 NCGCGSSCQCGNGCGGCKYSEVEPTTTTTFLADAT 41
>08_01_0379 + 3371125-3371988
Length = 287
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 9 DEAAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEP 158
D + A P A +FGR +TA V+Y GHG LD V P
Sbjct: 174 DISFASAATAMPAAAWPLFGRVQTAAPVSY-GGGHGSAAAATMFLDTVAP 222
>01_01_0333 - 2692529-2692634,2693246-2693323,2693908-2693972
Length = 82
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 77 NCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARH 205
NC CGS Q + CK P T+ G P H
Sbjct: 7 NCGCGSGCQCGSGCGGCKMYPEMAEEVTTTQTVIMGVAPSKGH 49
>09_06_0341 + 22406709-22407860
Length = 383
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 132 HLHATLHVLVCSMLPQLQFSYGRKLV 55
HL TLHV+ C LP F+ GR+LV
Sbjct: 28 HLRRTLHVVSCRPLP-THFA-GRRLV 51
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 71 TAENLYGLDWFTS 33
T + LY LDWFTS
Sbjct: 735 TLDKLYNLDWFTS 747
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 77 NCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARH 205
NC CGS Q + CK P T+ G P H
Sbjct: 1089 NCGCGSGCQCGSGCGGCKMYPGMAEEVTTTQTVIMGVAPSKGH 1131
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 140 GASIYTQHSMSSFAVCYRS 84
GAS+ S ++FA CYRS
Sbjct: 207 GASVLLAASAAAFAACYRS 225
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 165 EVWVLPGRGGVHLHATLHVLVCSMLPQLQFSYGRKLVR 52
E W+LP R L + +LV + P S+ R L++
Sbjct: 345 ERWILPWRVSTRLRSLRRLLVADVPPTWDVSWPRLLLQ 382
>01_06_0698 - 31311529-31312055,31312160-31312346
Length = 237
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 262 ATCPPPFPVTLISTPENL*MPSK 194
AT PPP P + S PE+ P K
Sbjct: 168 ATTPPPLPPSWGSAPEHAQAPGK 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,089,325
Number of Sequences: 37544
Number of extensions: 187011
Number of successful extensions: 520
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -