Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A07
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   107   1e-24
Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    27   2.4  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81047-1|CAB02827.1|  490|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U80023-10|AAG24042.1|   97|Caenorhabditis elegans Hypothetical p...    25   9.8  
U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF039050-2|AAC47935.1|  499|Caenorhabditis elegans Cytochrome p4...    25   9.8  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  107 bits (257), Expect = 1e-24
 Identities = 46/73 (63%), Positives = 62/73 (84%)
 Frame = +3

Query: 45  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKFSGV 224
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+G  +F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 225 DIRVTGKGGGHVA 263
           DIR+   GGGHVA
Sbjct: 65  DIRIRVSGGGHVA 77


>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 134 SIYTQHSMSSFAVCYRSCSFLTAEN 60
           S+  QHS+ +F VC ++C F  + N
Sbjct: 130 SLTCQHSVFAFRVCRKTCGFCASVN 154


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 121 NTPCPRLQYATAVAVFLRPKTCTAWIGSRLASCTAAS 11
           NT C R     A A   R  TCT++I     +C A S
Sbjct: 183 NTYCQRTCSRCASATTTRSSTCTSFISDSSTACRAWS 219


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 253 PPPFPVTLISTPEN 212
           PPP P+T +  PEN
Sbjct: 183 PPPLPLTTLEVPEN 196


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 186 VPVVCTEEVWVLPGRGGVHLHATLHVLVCSMLPQLQFSYGRKLVRLGLVHVL 31
           +P      V ++ G G V  +  L  +  S LPQ +F   RK  RL L H +
Sbjct: 104 IPFTIQLFVGLIIGNGAVCSYVYLFEIRSSSLPQNRFKITRKSTRL-LYHAI 154


>Z81047-1|CAB02827.1|  490|Caenorhabditis elegans Hypothetical
           protein C41G6.1 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 45  IQAVQVFGRKKTATAVAYCKRGHGVLRVNG 134
           ++   +FG + T   + Y + G G++  NG
Sbjct: 89  VKKANIFGHRFTTGVMNYIREGRGIIGSNG 118


>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 173 VLKKSGFYQVEGASIYTQHSMSSFAVCYRSCSFL 72
           V  ++G Y    A I   +    F+ CY  CS++
Sbjct: 25  VCYEAGNYTGRSAPISNSYDPDGFSPCYTDCSYV 58


>U80023-10|AAG24042.1|   97|Caenorhabditis elegans Hypothetical
           protein F07C4.11 protein.
          Length = 97

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 112 CPRLQYATAVAVFLRPKTCTAWIGSRLASCTA 17
           CP    A+A+A  +   +CT +      SC A
Sbjct: 38  CPSTTAASALAAAVAASSCTTYAADSSPSCAA 69


>U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical
           protein C35D10.6 protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 93  AYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGIYKFSGVDIRVTGKGGGHVA 263
           AY   G    R       L++    +Y ++ P+LLLG     G+ +        HVA
Sbjct: 196 AYSSLGSPTYRKQLSEEPLIKELAQKYNVEIPVLLLGFAYCQGISVLPRTTNPEHVA 252


>AF039050-2|AAC47935.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 34A5 protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 45  IQAVQVFGRKKTATAVAYCKRGHGVLRVNG 134
           ++   VFG + T   + Y + G G++  NG
Sbjct: 89  VKRANVFGHRFTIGGMDYIREGRGIVGSNG 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,266,268
Number of Sequences: 27780
Number of extensions: 144791
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)