Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A05
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 64 2e-12
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 64 2e-12
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 30 0.047
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 29 0.11
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 4.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 23 7.2
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 23 7.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 23 7.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 22 9.5
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 22 9.5
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 22 9.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 22 9.5
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 64.5 bits (150), Expect = 2e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +3
Query: 114 RRTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
+ +P G+SHAKGIV+EK+GVEAKQPNSAIR CVRVQL
Sbjct: 37 KSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74
Score = 53.6 bits (123), Expect = 3e-09
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +2
Query: 8 GTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 130
G G+ ARK NHRRE+RWAD +KK +GT +K++PFG
Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFG 42
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 64.5 bits (150), Expect = 2e-12
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +3
Query: 114 RRTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
+ +P G+SHAKGIV+EK+GVEAKQPNSAIR CVRVQL
Sbjct: 37 KSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74
Score = 53.6 bits (123), Expect = 3e-09
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +2
Query: 8 GTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 130
G G+ ARK NHRRE+RWAD +KK +GT +K++PFG
Sbjct: 2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFG 42
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 29.9 bits (64), Expect = 0.047
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +3
Query: 36 AST*IIVASSDGPTRNSKKPTWVRDGRRTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCV 215
+S+ +++ + + RN +K + + G+ +G+ V+ K+PNSA+R
Sbjct: 15 SSSSVMLKTLNQTIRNKEKRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVA 74
Query: 216 RVQL 227
RV+L
Sbjct: 75 RVRL 78
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 0.11
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 201 WLNSAAWLQRQLFRGRCP*HEMHQPKGFAFHLVPMWAF 88
W+ WL++Q F C + + GF+ + W+F
Sbjct: 96 WIQQGVWLRKQDFLNDCKKGNLVREDGFSIFSILRWSF 133
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 69 GPTRNSKKPTWVRDGR 116
G R +KK TWVRD +
Sbjct: 308 GKWRQAKKYTWVRDNQ 323
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 67 MGRQGIQKSPHGYEMEGEPLRLVHL 141
+G Q I K+ ++G+ LRLVHL
Sbjct: 1338 VGWQAITKAIFPKAIDGDLLRLVHL 1362
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 46 ESSSRAAMGRQGIQKSPHGYEMEGEPLRLVH 138
+ SRA + R K+PH + + P L H
Sbjct: 137 DRESRACLHRSEFPKNPHAFLAQDLPHGLPH 167
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 139 DAPTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPPR 11
+ PT V PS V PS+LA ++ + + PR
Sbjct: 153 ERPTPSVGAPSSLASSMDSVRVAPSMLAASHQIVPQYSENNPR 195
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 47 NHRREQRWADKEFKKA 94
N RRE+R + KEF KA
Sbjct: 530 NTRREKRKSKKEFLKA 545
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 123 GFAFHLVPMWAFLNSLSAHR 64
GF+ H++ +W L SL +R
Sbjct: 425 GFSIHVLVIWGKLKSLYLNR 444
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 182 GFNANFFEDDALSMR 138
G + NFFE+D S+R
Sbjct: 11 GLSLNFFEEDGPSLR 25
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 122 PFGWCISC*GHRP 160
P GWC C H+P
Sbjct: 689 PPGWCEYCLAHQP 701
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,394
Number of Sequences: 5004
Number of extensions: 19020
Number of successful extensions: 47
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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