Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_A05
(227 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 64 1e-11
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 64 1e-11
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 61 1e-10
02_02_0485 + 10853712-10854686 29 0.40
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 28 0.93
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 27 2.8
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 26 3.7
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 26 4.9
12_02_0535 + 20117205-20117401,20118556-20118628,20118725-201187... 26 4.9
05_03_0527 - 15025031-15025993 25 6.5
05_03_0524 + 14994170-14995132 25 6.5
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 25 6.5
06_03_0416 + 20568087-20568702,20568767-20570313 25 8.6
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 25 8.6
02_05_0866 - 32331629-32334328 25 8.6
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 25 8.6
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 25 8.6
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +3
Query: 117 RTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
+ P G+SHAKGIVLEK+G+EAKQPNSAIR C RVQL
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL 73
Score = 52.4 bits (120), Expect = 5e-08
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +2
Query: 8 GTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPF 127
G RG+ RK HRR QRWADK +KK+H+G WK PF
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPF 40
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +3
Query: 117 RTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
+ P G+SHAKGIVLEK+G+EAKQPNSAIR C RVQL
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL 73
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +3
Query: 117 RTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
+ P G+SHAKGIVLEK+G+EAKQPNSAIR C RVQL
Sbjct: 207 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL 243
Score = 52.4 bits (120), Expect = 5e-08
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +2
Query: 8 GTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPF 127
G RG+ RK HRR QRWADK +KK+H+G WK PF
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPF 40
Score = 52.4 bits (120), Expect = 5e-08
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +2
Query: 8 GTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPF 127
G RG+ RK HRR QRWADK +KK+H+G WK PF
Sbjct: 172 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPF 210
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 117 RTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
+ P G+SHAKGIVLEK+G+EAKQPNSAI C RVQL
Sbjct: 108 KKPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQL 144
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/36 (55%), Positives = 23/36 (63%)
Frame = +2
Query: 20 GIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPF 127
G+ RK HRR QRWADK +KK+H G WK PF
Sbjct: 77 GMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPF 111
>02_02_0485 + 10853712-10854686
Length = 324
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 62 ARDDDSRACAPCEYPASCR 6
A DDD RA AP E PA CR
Sbjct: 124 AWDDDVRATAPVELPARCR 142
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 111 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRIPRLV 10
H+V WAFL + C F C+ V++ LV
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQLFNLV 610
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 19 GYSHGAQARESSSRAAMGRQGIQKSP 96
GY HG + + SSR + R G+ +P
Sbjct: 195 GYCHGCRCQRCSSRPSRDRDGVAWAP 220
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 130 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANT 20
T ++P H+ + +G S A ++ VLAR ANT
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANT 219
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 17 RGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGWCISC*GHRPRKS 169
R I +R VN ++ D+ FKKA RW G C +C G +KS
Sbjct: 96 RDIVLSRPAVNAVDQRGEEDQAFKKARTVPRWLQ---GCCFNCLGLGHQKS 143
>12_02_0535 +
20117205-20117401,20118556-20118628,20118725-20118787,
20119167-20119220,20119303-20119359,20119615-20119707
Length = 178
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 7 RHEAGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGE 120
RH +G+ A A SSS +A+ + + S Y+ E E
Sbjct: 39 RHRSGHRKDAAAAASSSSSALKARKDRSSSSSYDSEHE 76
>05_03_0527 - 15025031-15025993
Length = 320
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 83 FKKAHMGTRWKANPFGWC 136
FK + + RW A P GWC
Sbjct: 136 FKPSRVIVRWWAPPGGWC 153
>05_03_0524 + 14994170-14995132
Length = 320
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 83 FKKAHMGTRWKANPFGWC 136
FK + + RW A P GWC
Sbjct: 136 FKPSRVIVRWWAPPGGWC 153
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 56 REQRWADKEFKKAHMGTRWKANPF 127
R +RW DK+ K R KA+PF
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPF 268
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 219 HEHNYEWLNSAAWLQRQLF 163
H Y+W+N +AW+ +F
Sbjct: 250 HMRLYQWINYSAWVPSDIF 268
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 72 PTRNSKKPTWVRDGRRTPSV 131
PT+++ +PTWV + P+V
Sbjct: 65 PTQHAPEPTWVNPSKPKPTV 84
>02_05_0866 - 32331629-32334328
Length = 899
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 208 LRMAEFGCLASTPTFSRTMPLA*DAPTEGVRLPSRTHVGFF 86
LR+ E G LA +RT+ + D PT+ + P R VG F
Sbjct: 129 LRLDESGNLALLDGRNRTLWQSFDRPTDVLVSPQRLPVGGF 169
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 23 IRTARKHVNHRREQRWADKEFKKAHMGTRWKANP 124
+ ++ K V R+++WA K+F TR + P
Sbjct: 61 VESSEKEVVEDRKRKWAAKKFASGSSSTRPRLAP 94
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 25 SHGAQARESSSRAAMGRQGIQKSPHGYEMEGEPLR 129
SHG+Q S+S A QGI S E E P R
Sbjct: 574 SHGSQDLPSNSSEAEKMQGISSSCSISEDENSPAR 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,421,811
Number of Sequences: 37544
Number of extensions: 147698
Number of successful extensions: 449
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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