Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A05
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    67   1e-12
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    35   0.009
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    29   0.34 
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    29   0.34 
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    29   0.59 
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    29   0.59 
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U80453-6|AAK31447.1|  349|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    25   5.5  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U40954-6|ABQ13043.1|  127|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = +2

Query: 8   GTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 130
           G  +G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFG
Sbjct: 2   GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFG 42



 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 114 RRTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
           +  P  GASHAKGIVLEK+GVEAKQPNSAIR CVRVQL
Sbjct: 37  KSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQL 74


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 78  RNSKKPTWVRDGRRTPSVGASHAKGIVLEKVGVEAKQPNSAIRNCVRVQL 227
           RN       R   ++   G SH KGIVL+ V    K+PNS  R C  V+L
Sbjct: 54  RNGPPKRRARSKDKSAISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -1

Query: 155 DALSMRCTNRRGSPSISYPCGLF*IPCRPIAARDDDSRACAPCEYPASCR 6
           D     C+N    P  +Y C      C PI+   D  R CA C    +C+
Sbjct: 314 DTCDQECSNGEWGPDCAYCCHCSEGTCHPISG--DCQRGCATCWDGVACQ 361


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -1

Query: 155 DALSMRCTNRRGSPSISYPCGLF*IPCRPIAARDDDSRACAPCEYPASCR 6
           D     C+N    P  +Y C      C PI+   D  R CA C    +C+
Sbjct: 314 DTCDQECSNGEWGPDCAYCCHCSEGTCHPISG--DCQRGCATCWDGVACQ 361


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 161 EDDALSMRCTNRRGSPSISYP 99
           E   LS++C  RRG+P  +YP
Sbjct: 76  EGQTLSLQCAYRRGTPKFTYP 96


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 161 EDDALSMRCTNRRGSPSISYP 99
           E   LS++C  RRG+P  +YP
Sbjct: 76  EGQTLSLQCAYRRGTPKFTYP 96


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  ASSDGPTRNSKKPTWVRDGRR 119
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  ASSDGPTRNSKKPTWVRDGRR 119
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical
           protein C47G2.5a protein.
          Length = 776

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 149 GHRPRKSWR*SQAAEFSH 202
           GHRP  +W    A +FSH
Sbjct: 676 GHRPENNWVDETAPDFSH 693


>U80453-6|AAK31447.1|  349|Caenorhabditis elegans Hypothetical
           protein C23H3.2a protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 27  ARRAST*IIVASSDGPTRNSKKPTWVRDGRRTPSVGASHAKGIVLEKVGVEAKQPNSAIR 206
           + R+S  +I A SD   + S+ P  +RD  R  S   +    IVL     + K+    + 
Sbjct: 13  SNRSSQAVIDAKSDSSEKGSESPKSLRDYHRGGSGSLTGGGAIVLTNNKPDMKKYKQKLD 72

Query: 207 NCVRVQL 227
           N + + L
Sbjct: 73  NRLGIVL 79


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 30  RRAST*IIVASSDGPTRNSKKPTWVRDGRRTPSVGASHAKGIVLEKVGVEAKQ 188
           R+AS  +I      P+R   K T V++   +  +  S  KG+ + K+ +E ++
Sbjct: 141 RKAS--LISNDEKSPSRKMHKITPVKEEESSQKMSKSKEKGVPIPKIDIEIEK 191


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 48  IIVASSDGPTRNSKKPTW 101
           II   +DGPT    KP W
Sbjct: 63  IIAPGADGPTETKAKPKW 80


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 177 QRQLFRGRCP*HEMHQPKGFAFHL 106
           +RQ FRGRCP      PK   F L
Sbjct: 22  KRQPFRGRCPSQNGETPKRSQFVL 45


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 47  NHRREQRWADKEFKKAHMGTRWKANPFG 130
           +H  +  + D  FKK   GTRW    +G
Sbjct: 248 HHLEQGHFFDGNFKKNADGTRWTCQNYG 275


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 225 AVHEHNYEWLNSAAWLQRQLFRGRC 151
           AVH  N  W N AAW       G C
Sbjct: 16  AVHSQNCTWSNWAAWTTCSDSCGNC 40


>U40954-6|ABQ13043.1|  127|Caenorhabditis elegans Hypothetical
           protein ZK813.7 protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 2   LFGTRRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 130
           LFGT       +  + H RE+R A     ++H  +  K   FG
Sbjct: 24  LFGTIDTWGYVQSRMLHHREERSASNSHSRSHESSELKPAGFG 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,958,187
Number of Sequences: 27780
Number of extensions: 114201
Number of successful extensions: 282
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)