Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_A05
         (227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.48 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.48 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   3.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   4.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   5.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   5.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   5.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   5.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 0.48
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 96  TWVRDGRRTPSVG 134
           TW +DGR+ P  G
Sbjct: 366 TWYKDGRQLPGTG 378


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 0.48
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 96  TWVRDGRRTPSVG 134
           TW +DGR+ P  G
Sbjct: 366 TWYKDGRQLPGTG 378


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 138 SHAKGIVLEKVGVEAKQPNSAIRN 209
           +H K +VLE+   ++K P S  R+
Sbjct: 73  THEKKLVLERSKTKSKSPESRDRS 96


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 113 SISYPCGLF*IPCRPIAARD 54
           ++SY  G + IP   I++RD
Sbjct: 113 AVSYTSGFYHIPVIGISSRD 132


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 129 PKGFAFHLVPMWAFLNSLSA 70
           PK  A H +  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 129 PKGFAFHLVPMWAFLNSLSA 70
           PK  A H +  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 129 PKGFAFHLVPMWAFLNSLSA 70
           PK  A H +  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 189 PNSAIRNCV 215
           PNSA+R C+
Sbjct: 584 PNSAVRKCM 592


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 97  VGFFEFLVGPSL 62
           +G  EFL+ PSL
Sbjct: 98  IGMGEFLIDPSL 109


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 47  SRACAPCEYPASC 9
           S  CA CE P  C
Sbjct: 216 SNMCALCEKPEVC 228


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 47  SRACAPCEYPASC 9
           S  CA CE P  C
Sbjct: 216 SNMCALCEKPEVC 228


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 62  QRWADKEFKKAHMGT 106
           +RW D+ ++  H G+
Sbjct: 311 ERWRDRIYEAIHTGS 325


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 47  SRACAPCEYPASC 9
           S  CA CE P  C
Sbjct: 216 SNMCALCEKPEVC 228


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 124 GVRLPSRTHVGFFEFL 77
           G  L   THV FF  L
Sbjct: 383 GAELMQETHVCFFSLL 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,000
Number of Sequences: 438
Number of extensions: 1274
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)